Conserved Protein Domain Family
LptD_2

?
pfam19838: LptD_2 
LptD protein
This entry likely represents the LptD homolog of Bacteriodetes bacteria. LptD is an essential outer membrane protein that mediates the final transport of lipopolysaccharide (LPS) to outer leaflet.
Statistics
?
PSSM-Id: 466203
Aligned: 144 rows
Threshold Bit Score: 246.317
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_068235617              276 VVTGPFNLVIG---------GVPT-PLGF-LFGFFP-MPnkSrgSGVIIPTFGQaqD--RGYYLSNGGYYFAPNDNIGVR 341  H...
jgi:Ctha_1212             252 VIARPLVLYVE---------GVPL--FAL-PFMFFPsKSgqT--SGIVIPSYGY--DsqIGYNISEGGYYWYINDYMDWL 315 
jgi:Clim_0492             190 IIARPFVMYIRpeifskrlpAIPV--LPL-PFMVFPlHEgrA--SGVIIPRLSH--DsdRGYYFSDLGYFWAVNDYVDMR 262 
PRJNA395488:CHL67_02990   205 VVARPLIMYIRpkpfstrfpAIPL--IPL-PFMTFPiKSerS--SGFLIPSFS---NddRGLYLSNFGYFWALSDYMDLR 276 
DSMZ:Ptc2401_01660        183 LVASPLIMYIRpvvfsrplpPVPL--IPM-PYMVVSlKRdrS--SGVLLPTPGW--EgeRGFTMSGLGYFWAMSDYADLR 255 
SHL04054                  178 ITARPVVLNIA---------DV---PVAVlPMIVAPlKSgrK--SGLLTPKFGG--DqkQGYYMSNLGFYYAANDYWDAT 241 
WP_047135016              183 VIARPVVLYIA---------DVPVfAL---PFGVFPnKSgrR--SGFIPPVWGQ--TynTGFYFKRFGYYWAMSDYADFA 246  C...
WP_014559920              197 IVAEWIFLYFG---------GVPF-PIPL-PFAVFPiESgrR--SGIIAPVFGD--DgtYGTYFSRFGYFWAISDYMDLN 261  I...
GBD00896                  180 IYTGPIQLYLF---------TIPT-PLWL-PFGFLPaIEgrR--SGPLPVQYGEd---eRGFYLRGWGWYWAISDYMDLQ 243 
PRJNA308615:AWN76_004275  140 IYSGPIRLYLF---------NIPT-PLWL-PFGFLPaQEgrR--SGPLPPTYGEd---eRGFYLRDWGWYWAINEYMDLQ 203 
WP_068235617              342 LTGDIYAgnaqtFGGYGVTADVSYLKRYQYQGNFNFRYTNRP-GIQILSsASLNTSldyvkppsaqTFWISWSHTPVA-R 419  H...
jgi:Ctha_1212             316 NEGDISL-----KGSWRMRTRFRYAERYHLSGNISAEFQREFdNEEGDP-GFEKVD----------GWNVEITHNQE--F 377 
jgi:Clim_0492             263 IEGDIAF-----NGSWRLGERFRYKSGDAFSGILEGEYERFFkGDEDDS-DYEKYS----------SWNLKFEHHQE--F 324 
PRJNA395488:CHL67_02990   277 LESDLAF-----NGSWRLGERFRYKNRYLFDGYLEGEYERFMsAHPDDP-DYVDYS----------NWNWKLVHHHR--F 338 
DSMZ:Ptc2401_01660        256 MEGDLSA-----NDSWRLGSRFRYKQRYGFEGTIEGEFERYLrEGADTP----DEN----------NWFIGMSHHQD--F 314 
SHL04054                  242 LKGDLIEgeearFERSTVTGEIRYKKRYLLDGNISYTAYLQE---------FDLGNs---------GYDIRFNHKQNLtP 303 
WP_047135016              247 TTFDWYT-----RGGWQVSSDFRYALRYKFNGAIGFAFANFYsGEEGDP-DKTSSK----------EWRLNIIHSQN--I 308  C...
WP_014559920              262 MTGDYYT-----RGSYRINSLFRYAKRYEFNGSLDGSFGNFViGEKDDP-DRSESK----------DWRLRWNHNQT--I 323  I...
GBD00896                  244 VRGGLWT-----KGSWQISPLFRYAKRYAFSGQLMLDYLHNRnGEKGDP-DFSVTN----------TASFRWTHNQT--L 305 
PRJNA308615:AWN76_004275  204 ARFGIWS-----QGSWQVAPLYRYNRRYRYNGQLQLDYVQNRrGEREDP-DFSVVN----------TASLRWNHSQT--I 265 
WP_068235617              420 PGGGRFSASVQAGSSSY-----NRTN-SlssrAFLSPTFSSSVSYTKQLRYLPINYSLKLSQSQNTQTGVMAFTLPDVSV 493  H...
jgi:Ctha_1212             378 DPSAKAKINLKFASQNTtayslNTFDaT----DIISQQATSYASFTKTFAEGQRSLSLSYQRTQELDEKNLSESF-SLSL 452 
jgi:Clim_0492             325 DPSSALDMRMQFQGGDRny-dlNTINtE----TIVNEQADSYASFGKTSDDENSMFSVGYQRSDYLQSSDEGQLL-RTEF 398 
PRJNA395488:CHL67_02990   339 DPTAKLDLNLYYQGGRRyy-dvNSINpE----SIINEQANSYASFSKTYDEGSRSITASYQRTQDLGDDDLTETI-GVSY 412 
DSMZ:Ptc2401_01660        315 DPTTRLDVDVLYQGGERyy-diHSVNgA----TIINDQASSYASFSKTWDEGQKSLTVDYQANQDLKDDDLTQTL-TTTW 388 
SHL04054                  304 DGKHTLSGSGSFVSSSk----vRKDNaLda-eTILDQQAKAALTYSGRFGN-NKSLTVKASQDHNLVTDRMERSIPDIQY 377 
WP_047135016              309 DPTSRISANVNISTNNYfratgTTVR------DVLQQTLISNVSYSKTIESINGSISINASRVQNLNTGTVDEVLPEISF 382  C...
WP_014559920              324 TPTMRFDARLEFLSNNQitrniSDIN------DLLRNEAVSNATLFKTWDESRNSISINYNRRQVFQTNEVFEILPSITF 397  I...
GBD00896                  306 GPSANFSANVNLTSSSYlraisERYD------DRVRQTISSNIRYSKNW--SSRSLNLSLSHQEVLTTGAVSLTLPQLSF 377 
PRJNA308615:AWN76_004275  266 SPTASFSGNVNLSTQNYlrtvsEQYD------DRVRQTIQSSIRYSKRWG-SGRSLTASASQQQQLASGQVSMTLPQIRF 338 
WP_068235617              494 GV-ARQYPYQWF--KL-----KA-RPFYDQISISYNLVAQ----NQITntvaARTLDgsvpllggst------------- 547  H...
jgi:Ctha_1212             453 YQ-GQFYPFK----GRr----STgDKIWEKLAFTPSTSMS----GSFNttesSHTANwtatsnmklslqhtfssaf-qat 518 
jgi:Clim_0492             399 YQ-NRYYPFRs---GRl----GSlGDWRDNVSVTSGASFR----ALFSsvddIGSYDyladanvqvgyyhelsgsdkilf 466 
PRJNA395488:CHL67_02990   413 YQ-GRVYPFRd---NAf----SLnD-WRSRFSVTPRASAS----AEYStisdLDYSDytgnasvqfayqqdfakgf-kan 478 
DSMZ:Ptc2401_01660        389 YQ-SRTYPf------------SAsDGWLSKLSITPSGSVR----VYDAdiddAEQRTytgnlglkaaylqkfapgy-tan 450 
SHL04054                  378 SMsGPLFDFELDe-DDvarddNSfMNYLEKLNYSFSNRFNyttvRALDslndKDTTAq---------------------- 434 
WP_047135016              383 SL-PQVFPFAGGvyG------VTdGKWHQRLSFGYSSRFV----NKRSta------------------------------ 421  C...
WP_014559920              398 TM-SQKYPFRSGs--------AStKNILETFGYSYSGNFE----NRRDrkdrD--------------------------- 437  I...
GBD00896                  378 SQ-SAFKPFRSAgsIS-----GRnERWYERLTLSYNGTLS----NQYTftrlPEATLlergdt----------------- 430 
PRJNA308615:AWN76_004275  339 SQ-NQRKPFQREnrPA-----GArERWYERITYSYTSSLD----NNFRftplSDTTGi---------------------- 386 
WP_068235617              548 agstlpisfkNIGSLLRNAQNG------------MQHQFGISLgSYTY-K--------FLHISPGFNYGETWYARSLDY- 605  H...
jgi:Ctha_1212             519 fsqsinttgrikhtapYSDVSG------------VKIAMPLSM-QSTLfG--------NFNVNTSLTLNEYLVDRTVEK- 576 
jgi:Clim_0492             467 tqgvalqgnliadddySDNRYG------------MRLTLPFRM-QSTLfR--------HFNVNAGLYFNHYFVGNDLLK- 524 
PRJNA395488:CHL67_02990   479 fsqkikvegkldynpvLDDRWG------------ARVELPFSV-NSTLfR--------YFNVNANLDFNNYYLDSSVEQ- 536 
DSMZ:Ptc2401_01660        451 fsqgvylegqlddqdlYGTRRG------------GKIELPFDI-QSTLfR--------YLNLSANVTFDNYFVDGSQIK- 508 
SHL04054                  435 -------------------yVG------------YTGNFSLDY-SGSLfD--------VINITPRASFAGYWTGTQWINp 474 
WP_047135016              422 --------------mtKQFSYG------------MAHNLSVNF-APTIr---------YFNVTPFFTYYENWYDRRTIK- 464  C...
WP_014559920              438 ----------------LKIRGG------------INHQLTASL-SPKIg---------YFSISPSFNYQERWYNKRIQRy 479  I...
GBD00896                  431 ----salsisWYDALFSPSAYRratgqeipfqfrATHRIPVSA-SFALqRlpllnrpfPVTFSSGLNYQEDWFLYTERRt 505 
PRJNA308615:AWN76_004275  387 ---------sWYEALFSAEKYEaatgdntpfeikATHRLPIAA-PFSIqRlpvinrtfILNLSPNLNYTEDWFFQTTRRy 456 
WP_068235617              606 --KY---VDraqaVRVDTI-PGF-SRAYSYSASVSLNTTFYG--TLVRkg---tHKIQALRHKVTPSLNYSYSPDLTRGs 673  H...
jgi:Ctha_1212             577 --IFneedstvteVETRGL-NKF-Y---TYSLTTSVQTRLYG--VLGTgileglLGLKALRHTLVPNLSYSYSPDFSRG- 646 
jgi:Clim_0492             525 --SFdsdg--ireTRRNGS-EGF-S---TWNFNADVSTRLYG--TLQTpfleglTGLKAIRHTLIPVISYTWNPDFTGS- 592 
PRJNA395488:CHL67_02990   537 --YYdgte--vvtVKQDDV-SHY-S---TWSVGLEAETRLYG--SAYTgfledlVGIKAMRHTLIPTVSYTYNPDFRSD- 604 
DSMZ:Ptc2401_01660        509 --YYedgs--lvtTYTSSG-EQF-S---TYGIGLEAKTRLYG--TLRSgfldnlFGMEAFRHTFVPTVTFDWNPDFRGE- 576 
SHL04054                  475 edSLkyrKR----MLLDPEhDNYgQFAYNHNYSISADTKLYGiwVPEI------GRFTGIRHVLSPKISYTYAPEIDTVk 544 
WP_047135016              465 --FYnpeTKq---VETKIQ-KGF-FQARYFKFGVSVSTKLYG--IWQPe----iFGISGFRHTLMPSVSLVYQPDFSSPf 531  C...
WP_014559920              480 sipnf---egkdsIITNDV-KEI-NFVRTFSLGVSASTKFYG--IFNPe----mLGVKSIRHTVIPSISYSFTPDFSTD- 547  I...
GBD00896                  506 vdt-------tgrIVTRSL-PGF-FALRQFSLGLSATTTLYG--LFPVr----iGNFEGLRHTVRPGLSFSYRPDFSAD- 569 
PRJNA308615:AWN76_004275  457 vds-------tgtRISEQD-PGF-FALRQFSAGVSANTTIYG--LFPVg----iGPYRGVRHTLRPTLSFNYRPDFGSH- 520 
WP_068235617              674 A---F----QKTYFAQLnangtdvvrdaagnqiaglrdatgvfldprnYSRY--QGFLYGAPSSg-A-VSQIGFSLQNAV 742  H...
jgi:Ctha_1212             647 TygyYksyiDEDG-DEVr------------------------------YSRF--ENSLYSPSS---GeSQTLGISLSNIF 690 
jgi:Clim_0492             593 DydyYgtvyDG-S-GYLr------------------------------YNRF--EHSVYHDIP---EgQSSVGLTLKNIF 635 
PRJNA395488:CHL67_02990   605 DydyYgtyiNALT-EPVr------------------------------YNRF--QNAVYSNVP---GeQSTVGLNLKNLL 648 
DSMZ:Ptc2401_01660        577 GydyYatymQD-G-AAVr------------------------------YNRF--GSAVYNVIP---EeQRRVGLHLQNLF 619 
SHL04054                  545 Sf---------------------------------------------aPHPYlgQS-FYQ------TkQKTVGFGLNNDF 572 
WP_047135016              532 Wk-nYgsyvDSTGQIVK-------------------------------YSYF--ENSIFGGAPI--GkLQSLNVGIGNIF 575  C...
WP_014559920              548 Gw-gYydyyTNQAGQRIk------------------------------YNKF--ENEIFGGASN--ReSQAINFSLSNIF 592  I...
GBD00896                  570 Fw-gYtrtyTDTSGH---------------------------------IVRY--GI----VPGVpfGrTQNLSFTLGNVF 609 
PRJNA308615:AWN76_004275  521 Fw-gYrasyVDTSGQ---------------------------------VIEY--DR----VPGVqrGlQQALSFSLANVF 560 
WP_068235617              743 E-MKVR-DD--KDTT-----GTnpvK---KVSLIDGLDFNGSYNFLAPA-FNLSPLSVSFRTQV-AR-KLSLISNASFEA 807  H...
jgi:Ctha_1212             691 E-AKVK-S---MDSTkaiddPS---ReesTFQFL-SLTASSGYNFAADS-LNISQLKLSASTTT-LSpYLTLSASATYDF 759 
jgi:Clim_0492             636 H-GRFA-S---SGDAr--------gAe-rTVQLL-SLSASTSYNFAAGQ-MPWAPLLITASSTA-LSpNFLLSAGALYDF 698 
PRJNA395488:CHL67_02990   649 H-AKIA-P---DDPAsg----------drVVQLL-SFNAETSYNFAADS-LRLSPLVLTASSNA-LApNLMFSAGATYDF 710 
DSMZ:Ptc2401_01660        620 H-AKFR-G---DNSGdg-----------nVVQLM-RFDASSSYNFAADS-LQLAPLVLSASSNA-LSpNFLLSAGATYDF 680 
SHL04054                  573 DiKYLKvAGykPDTTkgdtaKAv-eDqygNRRLFTTRH-SLSYNFAADS-LRFSDITSSFGFQIlPDyLFTINTRHSF-- 647 
WP_047135016              576 E-MKTT-S---SDSAgq-------pK---KYQLL-NLNLSFSYNFV-DPnKKLSPLFVTARTTIa---GIDIFSSSTFDF 635  C...
WP_014559920              593 E-MKTQnDP--TDTT----------SkenKIQLL-NLGANIGYDFTADS-LKFSDLRLNYRTQ--IGtFFSFNGASSFSL 655  I...
GBD00896                  610 EtKRIQ-----TDTTgts-----rrQ---TLQLL-SLDLSTSYNFAADS-LRLSSINLSARTA--ALgPLSLTAAMVLDP 672 
PRJNA308615:AWN76_004275  561 EtKRVE-----TDTTgae-----qsR---TLQLL-NLDLSGSYNFAADS-LRLSDIGLNARTR--LFgQVDVSFRSTFSP 623 
WP_068235617              808 Y 808  Hymenobacter sp. PAMC 26628
jgi:Ctha_1212             760 Y 760 
jgi:Clim_0492             699 Y 699 
PRJNA395488:CHL67_02990   711 Y 711 
DSMZ:Ptc2401_01660        681 Y 681 
SHL04054                  648 Y 648 
WP_047135016              636 Y 636  Candidatus Kryptonium thompsoni
WP_014559920              656 Y 656  Ignavibacterium album
GBD00896                  673 Y 673 
PRJNA308615:AWN76_004275  624 Y 624 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap