3EEY,3LBY,3MTI


Conserved Protein Domain Family
rRNA_methylase

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pfam06962: rRNA_methylase 
Click on image for an interactive view with Cn3D
Putative rRNA methylase
This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Statistics
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PSSM-Id: 429214
Aligned: 168 rows
Threshold Bit Score: 116.353
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3EEY_H                50 VFGFDIQDKAIANTTKKLTDL----NLi-DR-----VT---LIKDGHQNMDKYI----D----CPVKAVMFNLGYLPS-- 106  Acetiv...
jgi:Ddes_0073         72 LLAMDVQAQAVAATGALLAAHgfahAAr-------------VLHTGHECLADVlaalapedrqRPLACVVFNLGWLPG-- 136 
Q39RT7               988 VWAFDVQAKALAATEERLAEA----GCr-DR-----VA---LVHGGHERLAEVV----T----GPVRAVVFNLGFLPG-- 1044 Geobac...
jgi:Amuc_0960         95 VHAFDVQEEAIRATRERLEKE----GLltPS-----VQ---LHLASHDRLAELV----G----GPVKAIVFNLGYLPG-- 152 
jgi:Pjdr2_1281        48 VHAFDIQQDALDRTLERLR------PLe-ERgklpqVR---LHLRNHALMAEAV----GpsaeGNVAAVMFNLGYLPG-- 111 
jgi:Theco_1003        48 VYGFDIQQAALDAARARVAAEapetRLe-------------LFLASHHRMAELL----ParlmGRVSAVMFNLGYLPG-- 108 
WP_025333804          48 VYGFDIQPESLRLAEERLSRA----REe-ERn---aLApstLLLKSHAAMAEEL----PpswrGSVGAVMFNFGYLPSdd 115  Paenib...
WP_015737156          48 VYAFDIQEQALQLTRERLDKEp--pGTl-AE-----VS---LLLQSHSLMRECV----PeiehGRMGAIMFNLGYLPAds 112  unclas...
ADO55433              48 VYGFDIQQAALDYARRRLEEDt--sPSl-AE-----VS---LLLQGHEHMREVV----PdllhGKVAAVMFNLGYLPSeg 112 
zhongguo:PM3016_626   48 VHAFDVQPRALEQTALRLGRElpegQQr--------VH---LHLRSHGEMERVL----PeearGRVAAVMFNLGYLPG-- 110 
3EEY_H               107 G--DHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPILVC 184  Acetiv...
jgi:Ddes_0073        137 G--NKDLVTTPATSLPALEAALEALAPGGCISLHCYTGHEGGAEEAAALEAWVRSLPPRRWRVLALADANRERAAESLLL 214 
Q39RT7              1045 A--PRETVTTPETTIAGLEQAAALLLPGGLVTVAVYTGHPGGADEGAAVEDWAAALPPGRFNVWHCRQGNRSGAAPYLLI 1122 Geobac...
jgi:Amuc_0960        153 G--DKKTVTRTECTLAALEQAAALIAPNGLLSVMCYPGHEGGKEEAEAVEAFLSRLPHHSWRAGKYQLLNTGTPAPFQIC 230 
jgi:Pjdr2_1281       112 G--DESVITVPTTTIAALDAALALLRRGGIVTVALYPGHPGGAEEAAIVADWAAKLPGALYAAVLYR-QPQRDTAPYLIA 188 
jgi:Theco_1003       109 AddVRTVVTRPETTLAALDASLAFLRPGGVLTVVVYTGHEGGREEGEAVDAWARALPASAGQAVLYRMPQLPQ-APYLIA 187 
WP_025333804         116 A--DKSVITLPDSSVAALEASVGLLRPGGIVTAVLYPGHPGGELEAEAVMAWASSVPQQTASAIVYRQLQR-KTAPYVIA 192  Paenib...
WP_015737156         113 S--DKRIMTETASTLTALEAAIELLRPGGIITIVLYPGHKGGDAEADAVQAWAGELPQHKVQTILYRGLQRSE-APYLIA 189  unclas...
ADO55433             113 A--DPTVITHTDSTLVALEAALQLLRPRGILTAVLYPGHAGGREEAEAVLHWASTLPVSSGQSIIYRQLQRDA-SPYVVA 189 
zhongguo:PM3016_626  111 D--DHATVTLPESTLEALQASAKLLRRGGIITAVLYTGHPGGREEADAVEKWAAGLSQREFQVLQYRFVNQVHSPPYLIA 188 
3EEY_H               185 IE 186  Acetivibrio thermocellus ATCC 27405
jgi:Ddes_0073        215 VE 216 
Q39RT7              1123 AE 1124 Geobacter metallireducens GS-15
jgi:Amuc_0960        231 af 232 
jgi:Pjdr2_1281       189 VE 190 
jgi:Theco_1003       188 VE 189 
WP_025333804         193 LE 194  Paenibacillus sabinae
WP_015737156         190 LE 191  unclassified Paenibacillus
ADO55433             190 VE 191 
zhongguo:PM3016_626  189 VE 190 
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