1R8I


Conserved Protein Domain Family
VirB5_like

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cd14262: VirB5_like 
Click on image for an interactive view with Cn3D
VirB5 protein family
This family contains VirB5 domains, including TraC, a VirB5 homolog encoded by the pKM101 plasmid, and similar proteins. VirB5 is one of 11 conserved proteins (VirB1-VirB11) in Agrobacterium tumefaciens, the causative agent of crown gall disease, that span the inner and the outer membrane, and is involved in type IV DNA secretion systems (T4SS) which mediate the translocation of virulence factors (proteins and/or DNA) from Gram-negative bacteria into eukaryotic cells. VirB5 assembles extracellular pili by interacting with several essential proteins. VirB2-VirB5 complex formation precedes incorporation into pili; it depends on the inner membrane protein VirB4 to interact directly with and stabilize VirB8 in order for VirB5 to bind to VirB8 and VirB10. Mutagenesis studies show that VirB5 proteins participate in protein-protein interactions important for pilus assembly and function.
Links
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Statistics
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PSSM-Id: 271354
Aligned: 98 rows
Threshold Bit Score: 74.6902
Created: 11-Jun-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 22 residues -Click on image for an interactive view with Cn3D
Feature 1:3-helical coiled coil [structural motif]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ######################                                                   
1R8I_A        15 EQLEQMAQQLEQLKSQLETQKNMYESMAKTTnlgdllgtstn-----------tlannlpdnwKEVYSDAMnssssvtps 83  Escherichia coli
ACS22406      45 QQISGMQKQYDQLKESKDQLTRTHNAMTGSRgmeqllptpdl----------arnylppsygeLMGTLNGSsasyaglas 114 Variovorax para...
YP_693790     53 QQYNTLKDQLGNMQEQLQVQRDNLLAVTGENgygswgelpyd-----------lesldasleqLMEDYGVAhs------- 114 Alcanivorax bor...
AAX12232      44 SQYQQLVAQLENMQSQLKQAKDQYASMTGTRgmenllkgen------------rnviptnwqeTLAQMQGGdisglaqsi 111 Xanthomonas axo...
WP_005917895  44 QQYTQMVEQLAQLKAQLDQAKQQYESLTGGRgmgnlvrstg-------------aipknwqetLASMKNGElgdlskeir 110 Xanthomonas axo...
WP_010103745  40 HQVAAWGEQAAQMKKQIEQMKQQYESMNGTRgmgslvnnppsrqylpeeyktilqngvgqweaIYNAAKKFdistt---- 115 Verminephrobact...
AAF85577      40 LQVEAWKKQYEQMTSQIEQVKQQYESTNGIRnmgslvnnpaa-----------rqylpadyatILSQGVGNwaairsaae 108 Xylella fastidi...
WP_000768506  40 EDMAKYVEQIKQLENQFKQQVKQYESMTSARglanvinsqyd----------tdalsgintdsILRDSGINsasd----- 104 Escherichia coli
YP_067836     38 TELAKMVEQIRQLENQLRQMEREYTSMTGSRglgslinsayd----------kdvlkdldlkgLMSQNGLKssnd----- 102 Aeromonas caviae
WP_004743246  44 LQVQHMLSQIEQLKSQLETANKELDSISGVRglagvidsty------------dtavdvdpqgVLDRYGIRsgsd----- 106 Vibrio tubiashii
Feature 1                                                                                        
1R8I_A        84 vnsm----mgqfnaevddmtpSEAIAYMNKKLAekg---ayDRVMAEKAYNNQMQELSDMQALTEQIKSTpdlKSIADLQ 156 Escherichia coli
ACS22406     115 qvqsimkansvlsgtqleglsPELRQVVEQGRQsa----alLNGMTQNAYQNTSQRFSALQLLIDRIASAqdpKAIQDLQ 190 Variovorax para...
YP_693790    115 --------------------qADLSDYAAHKRQeklaplltQAGTTQQLLERSQQRYSTLKQLIRKVDDApnlKAATDLQ 174 Alcanivorax bor...
AAX12232     112 kana-----rkvdtatldqltPELRSMTEQLANta----asQQASAGETYDNASQRFTRLQGLMDAIPQAqdmKAIADLQ 182 Xanthomonas axo...
WP_005917895 111 qsa------slldedffadvdQAVKDTLDDSMAah----tdQQAVNQSFYDAATTRAQKMESLANQIDGAsdmKAINDLQ 180 Xanthomonas axo...
WP_010103745 116 ----------------tlagnSDTVQAFQAVAKqa----aiNRATAEEGYKAASKRFADIQVLLDRINTApeaKDIADLQ 175 Verminephrobact...
AAF85577     109 kf---------dvsmtslaanSDTAQAFQQAAKqa----alNRASAEMAYSTASQRFSDIQVLLDKINNApdaKDIADLQ 175 Xylella fastidi...
WP_000768506 105 -----------------fklpEDVAELYDTAAKna----atYAGQASRSLEQAQSRFTELSGLVRRVNTAtdpKEVMDLN 163 Escherichia coli
YP_067836    103 -----------------ynlgQGVGEVFDLSNKna----aqYSGQATKSLSQAQERFDELKGLVSKVNNSsdpKEVMDLQ 161 Aeromonas caviae
WP_004743246 107 -----------------ygmsGDVADLYDSSNQna----atWLAQSEKSLEQAQERFHDLTGLVAQVNNSpdqKDILDLQ 165 Vibrio tubiashii
Feature 1                                         
1R8I_A       157 ARIQTSQGAIQGEQAKLNLMNMLQQSQDKLLRA 189 Escherichia coli
ACS22406     191 ARIQAEQNMLTNEQTKLQSLYQVAHSEELMRKQ 223 Variovorax paradoxus S110
YP_693790    175 ARIAGEQAMLTNELINITLQQRQYEYEQALAVQ 207 Alcanivorax borkumensis SK2
AAX12232     183 ARIQVEQTMLQNESIKLQALAQASAAQRQIEAR 215 Xanthomonas axonopodis pv. glycines
WP_005917895 181 ARVAIEQVQLTNELIKLQSLNMIAQQQRETRAQ 213 Xanthomonas axonopodis
WP_010103745 176 ARIQVEQVMLQNEANKLTALQMLASAQRDLHTQ 208 Verminephrobacter aporrectodeae
AAF85577     176 ARIQVEQVMMQNEANKLQALQLLVNAQRDLQIQ 208 Xylella fastidiosa 9a5c
WP_000768506 164 ARIGAEQAFLQNEVGKLQVLQQTAQANDALYQQ 196 Escherichia coli
YP_067836    162 ARIGAEQSFLQNEVAKLQILEQQAQANEQIRSQ 194 Aeromonas caviae
WP_004743246 166 ARIGAEEVMLENEMAKLTMLQSQAEANRAVHGQ 198 Vibrio tubiashii

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