Conserved Protein Domain Family
bHLH_AtFIT_like

?
cd11450: bHLH_AtFIT_like 
basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana Fe-deficiency induced transcription factor 1 (FIT) and similar proteins
The family includes bHLH transcription factors from Arabidopsis thaliana, such as FIT and DYT1. FIT, also termed FER-like iron deficiency-induced transcription factor, or FER-like regulator of iron uptake, or AtbHLH29, or EN 43, is a bHLH transcription factor that is required for the iron deficiency response in plant. It regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation. DYT1, also termed AtbHLH22, or protein dysfunctional tapetum 1, or EN 49, is a bHLH transcription factor involved in the control of tapetum development. It is required for male fertility and pollen differentiation, especially during callose deposition.
Statistics
?
PSSM-Id: 381456
Aligned: 6 rows
Threshold Bit Score: 123.786
Created: 10-Jun-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative DNAputative dimer
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:The N-terminal basic region of bHLH mediates high-affinity DNA-binding to specific hexanucleotide sequences
  • Comment:Based on the structure evidence that Arabidopsis thaliana MYC2 (5GNJ) binds DNA.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1              ##  ## ##   #                ##                                       
Q0V7X4       126 KTDRSRTLISERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQ 201 thale cress
Q2HIV9        50 SSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIEGLQYEEKKLEAEIRELESTPKSSLSFS 125 thale cress
AEO33594      68 SSPADKNIIMERNRRKRFNERLYALRSEVPNITKMDKATIIKDAIGYIQELQEQERRILAEMTELELRSQDTSPMS 143 Amblyomma maculatum
XP_019578263  48 SSPASKNIVSERNRRQKLNQRLFALRSVVPNITKMDKASIIKDAISYIQGLQYEETKLEAEIRELESTPMSSLSFS 123 Chinese rufous hors...
Q700E3        49 SPASSKNVVSERNRRQKLNQRLFALRSVVPNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPV 124 thale cress
O81900        27 ENFKSPNLEAERRRREKLHCRLMALRSHVPIVTNMTKASIVEDAITYIGELQNNVKNLLETFHEMEEAPPEIDEEQ 102 thale cress

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap