Conserved Protein Domain Family
RtcR

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COG4650: RtcR 
Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]
Statistics
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PSSM-Id: 443688
Aligned: 65 rows
Threshold Bit Score: 886.099
Created: 9-Feb-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_087460562   5 DSGNNVVFGFLGTQLDavskrRGKFDKRWERWRPTLSILQHpKTFPVSRLVLLYNANERDLLDTIVEDCRILSSTVELEL 84 
WP_011394164   1 --MKNVVIGLLGATMDk----RGKGPARWETWRPTVGIFMQ-QDLLIDRIELLHDARDSRLANNVGADIETVSPDTEVSL 73 
WP_011399226   5 KRKHKVVFGFLGSTMDavsrrRGKYEKRWQRWRPTVSIAQHpEAFPVDRLVLLYNPQDRELADEVIADIGDVAPKLQVDL 84 
WP_015817001   1 --MKTTVISILGTTMDr----RGKGENRWDKWRPTISMCQH-DDLLIDRLELLFDRRSTSLAKQVREDISQVSPETEVVF 73 
WP_013819902   1 --MKTVVISLLGTTLDn----RGFNQKRWGRWRPTLSLCQQ-PDLLVDRLELLCQSRYQDIADLLSRDIHSVSPETAVRQ 73 
WP_044615568   1 --MKTVVIGLLGTVLDa----RGKGVKRWNKWRPTVGIFMQ-EDLLVDRLELIHDARDHRLANNVGADVQTVSPDTEVQL 73 
WP_000650525   3 DAKKTVVIGFVGSTLD-----QGRKPDRWQRWRPTISLLMH-EDLLVDELVLLHDRQHHNLVKSIAADAKEISPQTQVSG 76 
WP_086934000   1 --MKTIAISILGTTLDk----RGVKKNRWNKWRPTISMCQQ-DDMIIDRLELIFDPRYQSLADTVTEDISQTSPETQVKH 73 
WP_087464570   1 --MKNVVIGLLGTVLDy----RSQGNKRWQSWRPSVGICMQ-EDFLVDRFELIHQVSEGRLARQVLEDIQTVSPQTEVTL 73 
WP_088617688   1 --MKTVVISLLGTSLDn----RGFNYKRWERWRPTLSLCQH-DDLLVDRLELLFQSQYQQIAENLTEDIRTISPETEVRQ 73 
WP_087460562  85 KELNFDSPWDINTVFPILYKFIAAYPFNVEEESYFFHLTTGSHIQQASVFLSVGARYFPGKLLQSAPDRSAnsspspnss 164
WP_011394164  74 RQISFSDPWDFEQVYSTLLDFAENYPFKPDEERYLLHITTGTHVAQICWFLLCEANYIPAQILQTSPDRGE--------- 144
WP_011399226  85 QQLDFDAPWDLHKVFPKLYQFIDGYPFDTEKEEYFFHITTGSHIQQISIFLSVGARYFPGKLLQTAPSRD---------- 154
WP_015817001  74 HNVNFNEPWDFESVYSSLLDFARAYRFRPSKEQYLVHITTGTHVAQICLYLLTEAGYFPGKLLQTSPAERA--------- 144
WP_013819902  74 HNLLMPDPWDFESVYAELLDFARAYPFDLENERYLLHITTGTHVAQICLYLLTEARYLPGLLVQTSPPPRN--------- 144
WP_044615568  74 HELRFENPWDFEQVYSTLLDFVEHYPFKPDQERYLLHITTGTHVAQICWFLLCEANYVPAVLLQTSPGRGD--------- 144
WP_000650525  77 HKVSIKDPWDFAEVYGALYDFVKTYPFDVEKNNYLLHITTGTHVAQICWYLLVDAHYLPAQLIQSSPNQH---------- 146
WP_086934000  74 HHIDFADPWDFESVYAALLDFSRAYSFKPNTEDYLVHITTGTHVAQICLYLLTEAHYIPGRLLQTSPGTE---------- 143
WP_087464570  74 TAVDFKNPWDFEQVYSLLLDFCLGYDFAPDKENYLLHITTGTHVAQICWFLLCEAHYLPAKILQSSPGKKR--------- 144
WP_088617688  74 HLINLDDPWDFQSVYAELLDFAQGYAFNSEQEQYLVHITTGTHVAQICLYLLTEARYLPGRLVQTSPPYKR--------- 144
WP_087460562 165 pnpknsagsnNKANSRLEVIDLD-NAPRAIADIFRKAKRNNTDYLKHGIQTRNNAFNKLITQIEQVAIRSKAPMLIMGQT 243
WP_011394164 145 ----------RVAAGKYHLIDLDlSKYDAISSRFKRQQLEGTEFLKSGIATRNARFNAMIQQIERVAIRSQAPILITGPT 214
WP_011399226 155 ----------HEGGSKVEVIDLD-NAPRSVAEIFSQSRKRDTDYLKSGIDTRNADFNQLIKQIETVAIRTRAPILITGPT 223
WP_015817001 145 ----------SNAPGQYQIIDLDlSKYDQIASRFKKEHQEGTAYLKGGIETNNADFNRMIEQLEKVSVRSQEPILITGPT 214
WP_013819902 145 ----------QAVAGLYQIIDLDlSKYDQIASRFSKEHQEGTHYLKGGIETRNLAFNKMIEQVEKVAVRSREPILLTGPS 214
WP_044615568 145 ----------NGVSGQCHLIDLDlSKYDAISSRFKRRQLEGTEFLKSGIATRNRQFNAMIQQIEQVAIRSVAPILITGPT 214
WP_000650525 147 ----------KTSEGEYRIIDLDlSRYDVLKQRFDDEQKQNWQQLKANISTHNKAFNQLIEEVELVATRSSAPILIMGAT 216
WP_086934000 144 ----------KNTQGSYQIIDLDlSRYDEITSRFKKEHEEGTVYLKGGIETNNAAFNKMIEQLEYVSVRSNDPILLMGPT 213
WP_087464570 145 ----------DGAGGHYQIIDLDlSRYDAISSRFRTQHLEGTEFLKSGIATRNPAFNQMIQQIEKVAIRSTAPMLINGPT 214
WP_088617688 145 ----------ETVPGHYQIIDLDlSKYDQLASRFAKEHQEGAHYLKGGIETRNPAFNKMIEQVEKVAIRSQEPILLTGPS 214
WP_087460562 244 GAGKSWLASRIYELKRRRLDLKGSFVEINCATLRGDNAMSTLFGHKKGAFTGAVDKRDGLLRRADRGLLFLDEIGELGLD 323
WP_011394164 215 GAGKSQLAGKIFELKKIRGSVKGEFVSINCATLRGDSAMSALFGHNKGAFTGAQTARKGLLAKADQGLLFLDEIGELGLD 294
WP_011399226 224 GAGKSRLGSRIYELKRKRQDVKGAFVEVNCATLRGDNAMSALFGHRKGAFTGAVEKRDGLLKEADGGVLFLDEIGELPLD 303
WP_015817001 215 GAGKSQLAQRVYELRKQRGKLKGKLVTVNCATLRGENAMSALFGHKKGAFTGATSDRAGLLKEANSGLLFLDEIGELGLD 294
WP_013819902 215 GSGKSQLAKRIYKLKKRRGQLAGALVEVNCATLRGDNAMSALFGHVKGAFTGAATARKGLLAEADNGLLFLDEIGELGLD 294
WP_044615568 215 GAGKSQLASRIYELKKMRGSIQGELVAVNCATLRGDSAMSALFGHKKGAFTGAQNARKGLLNKADQGLLFLDEIGELGLD 294
WP_000650525 217 GVGKSHLAKQIFQLKKDKFQLSGRFIDVNCATLRGDSAMSTLFGHIKGAFTGAAASRAGLLKSADQGILFLDEIGELGLD 296
WP_086934000 214 GAGKSQLAQRVYQLRKQRGKISGDLVIVNCATLRGENAMSSLFGHKKGAFTGATSDRPGLLKQANNGLLFLDEVGELGLD 293
WP_087464570 215 GAGKSQLAKRIFELKQKRGTVKGEFVAVNCATIRGDGAMSALFGHTRGAFTGAQNARKGLLARADKGLLFLDEIGELGLD 294
WP_088617688 215 GSGKSQLAKRIYQLKKKRGQFPGALVEVNCATLRGDNAMSALFGHVKGAFTGAVMVRKGLLAEADNGLLFLDEIGELGLD 294
WP_087460562 324 EQAMLLRAIEEKRFFPLGADKEEESDFQLIAGTNRDLRIEVKEGRFREDLFARINLWTYRLPGLAERREDIEPNIDYELK 403
WP_011394164 295 EQAMLLHAIEEKRFYPVGSDNPAHSDFQLIAGTNRDLQKQVDNGSFREDLLARINLWSYELPGLKDRREDIEPNLDYELQ 374
WP_011399226 304 EQAMLLRAIEDKRFFPLGADKEENSDFQLIAGTNRDLRKDVIDGRFREDLFSRINLWTYRLPGLAERHEDIEPNLDYELQ 383
WP_015817001 295 EQAMLLRAIEDKRFTPFGADSEVSSNFQLIAGTNRDLIQCAKAGQFREDLLARIDLWTYRLPSLKERLEDLEPNLDYELE 374
WP_013819902 295 EQAMLLRAIEDKRFMPLGSDRETGSRFQLIAGTNRNLFQQVEQGRFREDLLARINIWTYQLPSLQQRLDDLDANIDYELD 374
WP_044615568 295 EQAMLLHAIEEKTFYPVGADGPVSSDFQLIAGTNRDLQQQVAEGRFREDLLARINLWSYELPGLRHRREDIEPNLDYELQ 374
WP_000650525 297 EQAMLLKALEDKSFFPVGSDKEIQADFQLIAGTNRDLRNEVQAGRFREDLWARLNTWTFFLPNLKDRVEDIAPNIDFELQ 376
WP_086934000 294 EQAMLLRAIEDKKFMPLGADKESSSDFQLIAGTNKNLYKKVNEGRFREDLLARIDLWSYTLPSLRERLEDLEPNIDYELE 373
WP_087464570 295 EQAMLLHAVEEKCFYPVGADAPVSSDFQLIAGTNRDLYKAVDDGMFREDLLARINLWRYQLPGLKDRREDIEPNLDYELR 374
WP_088617688 295 EQAMLLRAIEDKRFMPLGSDKETSSRFQLIAGTNRNLFAQVEQGRFREDLLARINLWSYQLPSLKQRLEDLDANIDYELE 374
WP_087460562 404 HFEAGQGIRVRFSRSAKARYLQFALseDASWTGNFRDLNASITRMATLAESGEIDDNLVNGEIQTLRYLWGDDLLQPEse 483
WP_011394164 375 KAEQQLGHKVSFNKAARARFLHFAQqpDSLWQGNFRDLNACVQRMATLSEGGRINETLVDEECERLQHFWRRSGAHES-- 452
WP_011399226 384 RFERENGIRVRFSQESRKRYLKFACslSALWKGNFRDLNASVTRMATLAEAGEIDVALVESEMERLGYLWGMELRSTTqq 463
WP_015817001 375 QFSNKAGYRVSLNKDARTLYLAFGKspAASWSANFRDLNASITRMGTLADGGRITRNVVAEEIKRLEGKWLTTQQPPNpt 454
WP_013819902 375 KYSQKTNAMVGFNKQARADYLNFAKspEATWVSNFRDLNASIIRMATLAEGGRITPDGVEEEIQRLRRNWQGTESRDG-- 452
WP_044615568 375 QAESQMGYKVSFNKTARQRFLDFATspEALWSGNFRDLNACIQRMSILSDGGRINEALVQQECERLLTWWKPAEVNDS-- 452
WP_000650525 377 RFAAIHQRQLRFQRDALEIYLKFAKsaDASWQGNFRDLAASVTRLATLSQGELIRRDAVEKEIQRLKQLWLIQDESYNdk 456
WP_086934000 374 VHARKTNSLISFNKTAKTKYLTYGRseKGLWSSNFRDLNASITRMAALSDGGRITTAIVNEEISRLEKKWSHMKTTEIes 453
WP_087464570 375 QSEIQRGHKVSFNKSARERYTAFALspDAQWRSNFRDLNASVQRMVTLADGGRINEANVQDEINRLVEQWHPEHAGSRl- 453
WP_088617688 375 KYSQKTRTLIGFNKQARECYLQFAKapEATWNSNFRDLNASITRMATLADGGRITLEVVAEEIDRLRHAWRQNQGDNA-- 452
WP_087460562 484 ksafsrapkaltsaqlssaqfspaVAILTNYLPQSQIELLDLMEQIELSTTIMACLESHSAAEAGRKLYNKSRLKRKKTN 563
WP_011394164 453 ------------------------LPLLEDYLSPGQMAEIDTFDQYQLRSVIALCRNSRSLSEAGRQLFNRSRLRKSSSN 508
WP_011399226 464 ----------------------veAILLENLLSPEQIEEMDHLDQVQLEAVVRACRDSSSAAEAGRRLFAASRLKKRRLN 521
WP_015817001 455 ----------------------tpQLLLEPLLGSAGLNALDYYEQMNLAGIVSVCKASSSMAEAGRKLFDKSRNLKKSNN 512
WP_013819902 453 -------------------------PDLETLIG----KPLDLFDQLQLRQVVRICQTSQTAADAGRKLFNLSRQQKNSGN 503
WP_044615568 453 ------------------------LPALEEILEPEQLADMDLFDQQQLRHVVAVCRDSQNISQAGRKLFNRSRLKKSSAN 508
WP_000650525 457 -----------------------dADILLSYLSPEQLEQIDEFDQIQLRGVLKVCENSKSMAEAGRQLFSVSRQQRNTTN 513
WP_086934000 454 -----------------------kSNILVEILPPKVLSNMDYYEQEKLAIVLNTCKVANSMAEAGRTLFNKSRQSKSSAN 510
WP_087464570 454 -----------------------tSLNLADFLSEDVLATLDRFDQVQLADVIRVCRESRSASEAGRRLFDRSRMRKKTSN 510
WP_088617688 453 ------------------------ATDLAELLD----APVDLFDQAQLAYVIRICQTSHSAAEAGRKLFNVSRQQKASGN 504
WP_087460562 564 DGARVITMLEKHGLSFDQLHDSE 586
WP_011394164 509 DSHRLRQYLNKFDLEFDNLKS-- 529
WP_011399226 522 DSQRVAAILDKYGLHFDQIKNAW 544
WP_015817001 513 DSHRVKQLLAKYGLEFSDIQ--- 532
WP_013819902 504 DSHRLIQYLAKFGLDFKTVKQWA 526
WP_044615568 509 DSHRLRQYLAKFDLKFERVQ--- 528
WP_000650525 514 DSDRVKKYLARFGLSWNNFQ--- 533
WP_086934000 511 DSHRVKQILSKYNLTFSDIN--- 530
WP_087464570 511 DAHRLRQYLTRFGLSFDDLS--- 530
WP_088617688 505 DSHRLIQFLSKYGLDFKTVKHYT 527
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