Conserved Protein Domain Family
SOBP

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pfam15279: SOBP 
Sine oculis-binding protein
SOBP is associated with syndromic and nonsyndromic intellectual disability. It carries a zinc-finger of the zf-C2H2 type at the N-terminus, and a highly characteriztic C-terminal PhPhPhPhPhPh motif. The deduced 873-amino acid protein contains an N-terminal nuclear localization signal (NLS), followed by 2 FCS-type zinc finger motifs, a proline-rich region (PR1), a putative RNA-binding motif region, and a C-terminal NLS embedded in a second proline-rich motif. SOBP is expressed in various human tissues, including developing mouse brain at embryonic day 14. In postnatal and adult mouse brain SOBP is expressed in all neurons, with intense staining in the limbic system. Highest expression is in layer V cortical neurons, hippocampus, pyriform cortex, dorsomedial nucleus of thalamus, amygdala, and hypothalamus. Postnatal expression of SOBP in the limbic system corresponds to a time of active synaptogenesis. the family is also referred to as Jackson circler, JXC1. In seven affected siblings from a consanguineous Israeli Arab family with mental retardation, anterior maxillary protrusion, and strabismus mutations were found in this protein.
Statistics
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PSSM-Id: 464609
Aligned: 12 rows
Threshold Bit Score: 230.471
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WGS:AANI:GJ20872-PA 240 TCDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKMQIFCNETQAHL------DMNPHLRDQGLEaa-aAGDG------ 306 
ABF56059            224 VCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQYKMDIFYKETQANLpa--glCSTLHPPMENKA----EGTG------ 291 
XP_014341859        108 VCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQYKMDIFYKETQANLpaglcnTMHPPIEHKSEG----TGV------- 176 
XP_002425613         37 TCDWCRHIRHTVNYVDFQDGEHQLQFCSDKCLNQYKMNIFCKETEAHL------QLHPHLQGLGSS----GGSNgkg--n 104 
XP_001846019        105 TCDWCRHVRHAVSYVDFQDGVTQLQFCSDKCLNQYKMQIFCNETQAHL------DMNPHLKEKSTS----AG-------- 166 
WGS:AAQB:GK17919-PB 245 TCDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKMQIFCNETQAHL------DMNPHLRDQGLD----AGNE------ 308 
XP_002081079        273 TCDWCKHVRHAVSYVDFQDGASQLQFCSEKCLNQYKMQIFCHETQAHL------DMHPHLRDQAMD----AGSE------ 336 
EKC19368            167 ICDWCKHVRHTVNYVDFQDGETQLQFCSSKCLNQYKMNIFCKETQEHLq-----QISPTTETKSDT----EGSSd----- 232 
EFX79079            141 VCDWCKHVRHTVSYVDLHDGQRQLQFCTDKCRNQYKMRLFVAEAS-SLgv--qsCATPGSKGET-S----PGTSidlkkq 212 
XP_015205980        228 VCDWCKHIRHTKEYLDFGAGERRLQFCSAKCLNQYKMDIFYKETQANLpa--glCNPGHPPMESKP----ESSN------ 295 
XP_003445554        226 VCDWCKHIRHTKEYLDFGAGERRLQFCSAKCLNQYKMDIFYKETQAALpg--alCNPGHGAGGEGKpecsSGV------- 296 
A5X7A0              255 VCDWCKHIRHTKEYLDFGAGERRLQFCSAKCLNQYKMDIFYKETQAALpg--glCNPPLPTSDTKSes-gAGV------- 324  zebrafish
WGS:AANI:GJ20872-PA 307 --AGLITPDLW---LRNCR-SRSASPAS--TISVSPGPAavcianasKRSSPCNTP---PSHPNKPLISVAPVSKLLAQK 375 
ABF56059            292 --VQLLTPDSWnipLTDAR-RKAPSPVAtaGQSQGPGPS--------ASTTVSPSDt--ANCSVTKIPTPVPKSIPISET 358 
XP_014341859        177 ---QLLTPDSWnvpLADAR-RKAPSPAAtaGLNQGPGPS--------ASA--TASPs--DANSSAAKIPTPVPKPLPANE 240 
XP_002425613        105 asVRLITPELW---LRDC---RSESPISdrSLSPQ------------DNNNSSSSPi-----EIKVVMRPPNENSQLTVK 161 
XP_001846019        167 ---SLITPDLW---LKNCK-SRSASPLSdrSESVSPAPSl------pMRPSPEPSPvmqSSPAKKPMISVAHPSKLLS-K 232 
WGS:AAQB:GK17919-PB 309 --AALITPDLW---LRNCR-SRSASPAS--TVSVSPGPI--------KRNSPCATP---PSNPTKPLISVAPVSKLLALR 369 
XP_002081079        337 --AGLITPDLW---LRNCR-SRSASPAStlSVSPGPPPAp------aVSRCPDSPP---SHHPSKPLISVAPVSKLLAQK 401 
EKC19368            233 -qQILITPDLW---LSNAK-HKNAKLRRkeAGDTDRELEnaekmeskSDHSRRQSPt--SASSSSDKLPVTNR--SILER 303 
EFX79079            213 stGILITPDLW---LSDC---QLDNPINvkLECNEET----------ELASIDSEPe--EQNCEIPLNLVHSSRRSVQPV 274 
XP_015205980        296 --LQLLTPDSWntpLGDLR-RKAPSPGTsmAGH-NQAPG--------PSGSASASPs-----EATAICSSA-KIPTPGPK 357 
XP_003445554        297 ---QLLTPESWgtpLTDLR-RKAPSPGGpsSTSVL-APSt------sSAASPSDTA-------AVCSPSSSSSAKIPTPR 358 
A5X7A0              325 ---QLLTPESWsapLSELRsRKAPSPVGatIAGPSG--S--------TSGSPSEAGt--VCSSSSSSSSSSSSTKIPTPR 389  zebrafish
WGS:AANI:GJ20872-PA 376 SPASSSITTGAPPPplpqlqrhh--vhagpkpgrRKRPHRAAG-AAGSETVASLlqkqq-------------qqqqpAPL 439 
ABF56059            359 PNIPPVSVQPPASI--------------------GPPLGVPPRsPPMVMTNRGP-----------------------VPL 395 
XP_014341859        241 SPNVAPVPIQP--Pan-----------------iVHPVGVPPRsPPMVMTNRGP-----------------------VPL 278 
XP_002425613        162 PSPPPSLTPSTLEItkvdr----------kergtHREKSRKTGsILSKSKRQGRygsgn-------------nerrgSSL 218 
XP_001846019        233 NLQPSAAVNARTVIkstrk----------rrpglRPLQQNTLHnRKNAKVDYGQltsnn-------------nnnnaSVL 289 
WGS:AAQB:GK17919-PB 370 SPQAAQASQPPPPPqtslhqqrqqhqnltsksgrRKRLHRG-GlSAGSETVASLlqkqq-------------qhhqpSPI 435 
XP_002081079        402 CPGPGPGVPPPPPPpvqrh----------lagklGRRKRRGISsSSGSETVASLlqkqqqhhqq---qqapqqhqapPTL 468 
EKC19368            304 MHGRDKSKRSSLREslher----------svprsKSPDSAQ---------PAQNlgipfvpphmwgaptfgmgippmGAV 364 
EFX79079            275 KRKPNLV-EIPLSkkgks-----------hrkhhSSS-----HqHKTSIYTRNLippp----------------pptLPC 321 
XP_015205980        358 PHESPTLPPPVPIP--------------------APPMGVPSGsPPMVMTHRGP-----------------------IPL 394 
XP_003445554        359 PHESPSLPPPPVpt-------------------lHPPVGVPSGsPPMVMTPRGP-----------------------MPL 396 
A5X7A0              390 PHESPSLPPPHPPPis----------------glHPALGMPPGsPPMVMTPRGP-----------------------VPF 430  zebrafish
WGS:AANI:GJ20872-PA 440 SADFAGSS---VPLPPLSPMPDQPQ-PQQQHQQ-HPPPQLPQPMgrpp----------agmPGGYFATPPNGM-LGHPFG 503 
ABF56059            396 PIFMEQQImqqIRPPFIRGPPHHASnPNSPLSNpMLPGIGPPPG-----------------GPRNLGPTSSPM-HRPMLS 457 
XP_014341859        279 PIFMEQQMmqqIRPPFIRGPH-APS-PNSPLSNpMIPGIGPPPV-----------------VPRTIGPSSSPM-HRPMLS 338 
XP_002425613        219 SPRNRENL---TPPKPNIFPPSFFPlNGTSLPTmHPPHPAPPP------------------PPHNGMPPDHGL-LKPPFL 276 
XP_001846019        290 NNNLPASS---MPKPATVTSANIQD-LRAGISLqNLTHSLTPTKfesrespttprppplniPPQFLQLPPNPA-MRPPFF 364 
WGS:AAQB:GK17919-PB 436 SADFAGSS---VPLPPLSPMPM----PEQSAPPpPAAAPPTPTQslgrg-------cataiPPSYFATPPNGM-LGHPFG 500 
XP_002081079        469 TADFGGSS---VPLPPLSPMPSMQEaPQQQQAPqVPPTQVPPRGpt-------------aiPASYFATPSNGVpMGHPFA 532 
EKC19368            365 PPWFYPGF---MPPGFMPPNMPMEG-LSGVLPSrTETPSATNNKrfa------------lsPNYDNESSKNAN-EERGHG 427 
EFX79079            322 PATTWPS----FPYPPHMVPSYILQ-SQFLALNrSLK-----P------------------PKNPCVRSTDRE-DQISFT 372 
XP_015205980        395 PFFMDHPMlpqIRSPFLRAPHT-PS-PNSPLPNpIIPGIGPPP------------------PPRNLGPTSSPM-HRPMLS 453 
XP_003445554        397 PLFMEHQMmqqIRPPFLRTSAHPGG-PNSPLSNpIIPGIGPPP------------------PPRTLGPASSPM-HRPLLS 456 
A5X7A0              431 PIFMEHQMmqqMRPPFLRPPG-----PNSPHSNpMIPGIGPPP------------------PPRTLCPPSSPM-HRPLLS 486  zebrafish
WGS:AANI:GJ20872-PA 504 AR-AAPPPPHPFLPPP--PGMLPRGf---G----------A---HFGPPPPPQLQP-----QLQPELQGALGALLGAAPP 559 
ABF56059            458 PHiHPPSTPTMPGNPPglLPPPPPG----A----------P---LPSLPFPPVSMMpngpmPVPQMMNFGLPSLAPLVPP 520 
XP_014341859        339 PHiHPPSTPTMPGNAPglLPPPPPGa---P----------F---PPGFPFPPVNMMpngpvPLPQMVNFGVPSLAPLVPP 402 
XP_002425613        277 PLgCFPPPPPPPPPPPppPPTGPRNf---QrpggqihhrpP---LISPPSPSGPTV-----INKPIRNPLLPPPRSLLPP 345 
XP_001846019        365 PL----NPAFRFGSPPnpQAMPPP-----P----------P---PNMDPNNPQNR-------HQPP-LLGFP-----APP 409 
WGS:AAQB:GK17919-PB 501 VR----PPHHFLPPPP---GMLPRGf---I----------P---PFGPPPPFATP-------QMPE--FGLL---GTAPP 545 
XP_002081079        533 GR-PPPPPHHFMHPPP--HGMMPRGf---G----------P---HFGPPLPPQ--------------MPELGSLLGAVPP 579 
EKC19368            428 RS-SSRPISSARSNTPrsSTPRNTSfstpT----------P---QSGAPLPNGVG-------MFGQNGMNFS-SYGGFPP 485 
EFX79079            373 PV--IESNKMPSEPVI--EQSSTKVa---T----------PpdeRTAEAINELTE-------NKQEINH-TKLLTPEIPP 427 
XP_015205980        454 PHiHPPTTPTMPGNPPglMPPHPGAp---M----------P-----GLPFPPVNMMpnghmPMPQMMNFGVPSLAPLVPP 515 
XP_003445554        457 PH-----VHPSSNPNPgmIPPHPGI---------------Pm--PGLPPFPPVNMMpngpiPLPPMMNFGMPSLAPLVPP 514 
A5X7A0              487 PHlHPSSTPTLSGNPPgiMPPHPAAh---M----------P-----GLPFPPVNMMpsgpiPVPPIMNIGMPSLAPLVPP 548  zebrafish
WGS:AANI:GJ20872-PA 560 VTVMVPYPI--IIPLPIPIPVPLPI 582 
ABF56059            521 PTLLVPYPV--IVPLPVPIPIPIPI 543 
XP_014341859        403 PTLLVPYPV--IVPLPVPIPFPIPI 425 
XP_002425613        346 VTVLVPYPValAIPIPLPIPIPIPL 370 
XP_001846019        410 VTILVPYPI--VIPLPLPIPIPIPL 432 
WGS:AAQB:GK17919-PB 546 VTVMVPYPI--IIPLPIPIPVPLPI 568 
XP_002081079        580 VTVMVPYPI--IIPLPIPIPVPLPV 602 
EKC19368            486 LTMILPVPV--PLPLPVPIPLPLPI 508 
EFX79079            428 NFVVLRIPY--LIPLPIPVPIPIPL 450 
XP_015205980        516 PTLLVPYPV--IVPLPVPIPIPVPI 538 
XP_003445554        515 PTLLVPYPV--IVPLPVPIPIPIPI 537 
A5X7A0              549 PTLLVPYPV--IVPLPVPIPIPVPI 571  zebrafish
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