Conserved Protein Domain Family
ligB

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PRK08097: ligB 
NAD-dependent DNA ligase LigB
Statistics
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PSSM-Id: 236150
Aligned: 100 rows
Threshold Bit Score: 781.796
Created: 9-Dec-2010
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
92113642   22 AWLRACLLVGLSTLAMPGW---ASappCPQMTPEAMQNDYQALDARIARWDRAYYRQGQRLVDDGTYDSAKRRLAHWAEC 98 
146305490   4 MKRWIAPLLLPLIAQAEP---------CPDWPDSRAQVEFAALSQQIAQWDDAYHNQGRSPIADELYDQARERLQRWQQC 74 
167036006   1 MPYLLLFAMLFALNTPLAW---AAs--CPDWTPQKAEAEAAQLQATLTGWDEHYHRQGIALVADELYDQSRQRLVHLQQC 75 
26991646    1 MPYLLLFALLFVLNTPLAR---AAs--CPHWNPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSHERLNHLQQC 75 
148550043   1 --MPYLLLFALLFALNAPLaraAS---CPQWSPQQAKAEVAQLRATLARWDEHYHRQGIALVADELYDQSRERLNHLQQC 75 
170719684   1 MSFFLRLAALLLLHTSIAQ---ASh--CPDWSTKQARTEVAQLRATLANWDDHYHRQGIALVADELYDQARHHLLHLQQC 75 
146284243  43 LAMPRLITLSLCLFAPACL---AT---CPNWDDARARQEIHQLQAQLAQWDDAYHRRGQSLVDDEIYDQSRAQLDGWRRC 116
66048020    1 MLPTFRLMTCAIVFVLPGLghaSQ---CPDWPAAKARSEVTALQQQIAEWDDSYHRQGISQIADELYDQARQKLNLWRSC 77 
28867612    2 LPALRLMTCALLTFFTTLS---HAs-qCPDWSHARASSEITALQQQIASWDDSYHRQGLSQIPDELYDQSRQKLNDWRSC 77 
104783946   1 --MSLRLLIPLLFLPGLALadhRP---CPDWPAQRARAEVSQLLKTLSHWDDHYHRQGVALVADELYDQSRQHLRHLQGC 75 
92113642   99 Fp-LLAKPSVNTHEPTGAKHHPVAQTGIAKLPDRDAVAGWVARQGDhpLWVQPKVDGVAVTLVYRHGRLAAAISRGDGVS 177
146305490  75 FapARQPLPEPLTGSAGPIAHPVPQTGLRKLND-AAIGEWIGSRDD--LWIQPKVDGVAVTLVYRQGRLHQAISRGDGRH 151
167036006  76 F--GLAPSPSPLTSARGPLPHPVPHTGVDKLADRQAVARWMAGKTG--VWVQPKFDGVAASLIYRQGQLVQLISRGDGLQ 151
26991646   76 F--AVGTSPSPLASARGPVPHPVPHTGVDKLADRQAVARWMTGKTG--VWVQPKVDGVAVSLTYQQGRLVQLTSRGDGVH 151
148550043  76 F--AVGTSPSPLASARGPVPHPVPHTGVDKLADRQAVARWMAGKSG--VWVQPKVDGVAVSLTYQQGRLVQLTSRGDGVN 151
170719684  76 Fg-QEFTDPSPLASARGPIAHPVAHTGVEKLHDAAAVARWMTGKKG--VWVQPKVDGVAVSLVYRQGRLVQLLSRGDGLQ 152
146284243 117 Fv-GTGAAPDPLQDAGGPLRHPVRQTGLVKLADEQAVATWIARRRD--LWIQPKIDGVAVTLVYRHGALQQAISRGDGLT 193
66048020   78 Fa-VSTPESDPLKTAVGPLPHPVPHTGVNKLADEGSVKGWLKGRND--LWIQPKVDGVAVTLVYEKGRLVQAISRGDGRK 154
28867612   78 Fa-VSTPQANPLKTATGPLAHPVPHTGVNKLADEKDVKAWLKGRTD--LWIQPKVDGVAVTLVYDEGRLVQAISRGDGTQ 154
104783946  76 F--DLASNDAPLATARGQVPHPVPHTGVDKLRDEPAVQRWLQGRQG--MWIQPKVDGVAVSLVYQQGQLTQLLSRGDGVL 151
92113642  178 GQDWYTKALHIAAIPSHLPaDAPpLVILQGELYARRTAHRQSRDGTDGARARIAGLMARDTLTDReGSTIGLFVWAWPNG 257
146305490 152 GQDWSARARQLPAVPTRLP-EAL-DLVLQGELYWRLEDHLQARDGGAGARGKVAGMMARHELSDTdGAAIGLFVWDWPDG 229
167036006 152 GHDWSRHIPQLGAVTRQLP-QAI-DLHLQGELYLRLNEHVQAKAGSANARGTVAGLLARKQLTREqGNTIGLFVWGWPHG 229
26991646  152 GHDWSRHIPQLGAVTRQLP-EAV-DLHLQGELYLRLDEHVQAKAGSANARGTVAGLLARKQLTGAqGNAIGLFVWGWPHG 229
148550043 152 GHDWSRHIPQLDAVTRQLP-EAL-DLHLQGELYLRLSDHVQAKAGSANARGTVAGLLARKQLTGAqGNAIGLFVWGWPHG 229
170719684 153 GHDWSRHIKDLDSITRQLP-QPL-DVVLQGELYLRLQAHVQAEAGSSNVRGTVAGMLARKQLGPEpGASIGLFVWDWPHG 230
146284243 194 GHDWTANARRLAAIPARLA-VPD-EVILQGELYWRLDRHVQASHGSAGARGRVAGAMASNGLDRNtAARIGLFVWDWPNG 271
66048020  155 GQDWTSQARLIKAIAQQLP-QAE-STILQGELYWRLDDHIQAASGSVNARSKVAGLLARQTISPQqADAIGLFVWDWPNG 232
28867612  155 GQDWTPQARLIKAIPQQLP-QPD-SLILQGELYWRLTDHVQAASGSVNARSKVAGMLARQTISPQqADAIGLFVWDWPDG 232
104783946 152 GHDWSRHIPQLGRIVRQLP-QPL-DTVFQGELYWRLADHVQAEAGSANARGIVAGLLARKQLSDEqGSGIGLFVWDWPAG 229
92113642  258 PDTMPERLETLAGWGFGDVAEMTHGVATAEDIAAWRQRWYRHALPFATDGVVVKRGDRPPGSDWQASPPDWAMAWKYPAR 337
146305490 230 PASMDERLSQLQALGFADSQHYSKPIRSVEEARQWRQHWYRHRLPFASDGVVLRQGTRPAGARWQAEAPHWAVAWKYPAS 309
167036006 230 PERQADRLAQLAQLGFPDSQHYSIAVDTLEDAARWREHWYRSPLPFASDGVILRLGSRPPAERWQAKAPYWIAAWKYPYV 309
26991646  230 PEQQAERLAQLARLGFPDSQLYSIAIDTLEDAAHWREHWYRSALPFATDGVILRQGSRPPAERWQAKAPYWIAAWKYPYA 309
148550043 230 PEQQAERLAQLARLGFPDSQLYSIAIDTLEDAAHWREHWYRSALPFATDGVILRQSSRPPAERWQAKAPYWIAAWKYPYA 309
170719684 231 PDNQGERLTQLAAWGFPDSQRFSTAIDTPEEATHWRLHWYRSPLPFATDGVILRQDSRPPADRWQPNAPYWIAAWKYPFA 310
146284243 272 PDSMNARLGQLAALGFPDTQAFSQPVETLEHARHWREHWYRQALPFATDGVVLRQEQRPPAERWQAEP-HWAAAWKYPLR 350
66048020  233 PADMAQRLAGLQAMGFEDSAAYTHPLENYVQAARWREHWYRNPLPFATDGVILRQGQRPPAQRWQASAPYWIAAWKHPYA 312
28867612  233 PADMAQRLAGLQAMGFNHSVAYTHPLENHAQAADWREHWYRNPLPFATDGVIMRQGQRPPAQRWQASAPYWIAAWKHPYA 312
104783946 230 PGSQAERLAQLTALGFIDSQRFSVAIEGFDAAAHWRQHWYRTALPFATDGVILRQDARPPAQRWRAQAPYWIAAWKYPFS 309
92113642  338 EALARVDALEFSVGRTGRIAVVAELEPVLLGDKRVTRVSLGSLAHWRRTDVRPGDQVRLRLAGLTIPQLQEVVVRTRPRP 417
146305490 310 QALAVVQAVDFRIGRSGRITPVLRLQPVDLDDRRISRVALGSVPTWKSLDVRPGDQVAIRLAGLTIPRLDSVIWRSPHRA 389
167036006 310 QALAEVRDVRFRVGRTGRITPIAHVQPVTLDDRRITQVSLGSLARWQALDIRPGDQVAISLAGLTIPRLEHVVHRAVERQ 389
26991646  310 QALAEVRDVRFRVGRTGRVTPVLHVQPVTLDDRRITQVSLGSLARWQRLDIRPGDQVAISLAGLTIPRLEHVVHRAVERQ 389
148550043 310 QALAEVRDVRFRVGRTGRVTPVLHLLPVTLDDRRITQVSLGSLARWHTLDIRPGDQVAISLAGLTIPRLEQVVHRTVERQ 389
170719684 311 QALAEVREVRFLIGRTGKVTPLLRLKPVTLDDRRISQVSLGSLARWRALDIRPGDQVAISLAGLTIPRFDQVVHRAVERQ 390
146284243 351 KALTEVRDVEFRIGRTGRITPLLQLAPVQLDDRRVRMLSLGSLDRWQALDVRPGDRVAVALAGHSIPQLDSVVWRHTERA 430
66048020  313 QALAEVRKVNFKIGRSGRITPVLELTPVRLDDRTVSRISTGSLQRWQTLDIRPGDQIAVSLAGLTIPRLDGVVSRAAERA 392
28867612  313 QALAEVRKVHFNIGRTGKIAPVLELTPVRLDDRTVSRISAGSLSRWEKLDIRPGDHIAVSLAGLTIPRLDGVVSRAAERA 392
104783946 310 QALAQVRDIHFRIGRTGRITPLLQLEPIQLDDRRISQVSLGSLARWTQLDIRPGDQVAVSLAGLTIPRVESVVHRSPLRA 389
92113642  418 QVDAPEADQYDRLSCLRFTPACRDQFLARLEWLGSDEGLDFPGIGPATWNQLVDAGLVKGLLDWRTLDTAALEALPGVGK 497
146305490 390 PVEVPRSADYHALSCWRSSPSCQHQFQARLAWLSSKQGLALSGVGPGTWSSLPLQGLLD----WLELDKAQLQSLPGIGP 465
167036006 390 PLGAPAPGRHHALSCWQPSEGCEEQFIARLTWLSGKQGLALPRTGPGTWRRLVDAGLVTSMTDWLQLDAERLQQVPGISS 469
26991646  390 PITAPAPDQHHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQAPGISR 469
148550043 390 AVAAPAPDRYHAHSCWQASEGCDEQFIARLTWLGGKQGLALPRTGPGTWRRLVEAGLVTSMTDWLQLDAERLQQAPGISR 469
170719684 391 VLPVPEAEQYGQHSCWQASDGCQEQFIARLVWLSGKQGLAMPGTGKGTWKRLVQAGLVTSLTDWLTLDAQQLLSVPGISR 470
146284243 431 PVAAPDPRRYHPDSCWRPAPGCEQQFLARLVWLGGRQGLALEGVGAGSWQALLEAGLLPDLLAWLELDAAALEQVPGIGK 510
66048020  393 DMIIPRADDFHELSCWQATPGCESQFRARLAWLSGKKGLALPGVGPGTWNTLIDNGQIMGLLDWMTLNHAELVNIPGFAE 472
28867612  393 EMSVPHASDYHESSCWQAAPGCESQFRARLVWLSGKKGLALPGVGPGTWDKLIESGHISGLLDWMTLNHAELANIPGLAE 472
104783946 390 PVLVPDPADHHLLSCWQASPACQEQFLARLAWLGGNKGLDMAGVGSGVWHQLVESGKVATLSDWLELTREDLLEVPGIAQ 469
92113642  498 KTARAWQRHFALADTRSAVRWLRALGVPAVprQALtdaLERYGMAGLGTLAPPDWRDYSGIGETRAMQLTRFFRDTDIRH 577
146305490 466 RRAAQLQQAFAQARDRPLQQWLRALGAPPG--FDA---GGLDDWPSLIERQRDDWLRRPGVGPKGADRLLAFFSHPEVQR 540
167036006 470 LTAAQLLGSFDQARSRPFDQWLRGLGAPIG--KHL---QLTGGWQEMASRSAGQWQTVPDIGVKRSRQLVGFFAAAEVQA 544
26991646  470 LTATQMLGSFDQARSRPFDQWLRALGVPIG--KHL---PLTGNWQALASRSAGQWQTVPGIGAKRSRQLVEFFAASEVQA 544
148550043 470 LTAAHLLGSFDEARSRPFDQWLRALGVPIG--KHL---PLTGDWQALASRSAGHWQTVPGIGAKRSRQLVEFFAASEVQA 544
170719684 471 KTATQLQRSFDIGRNRPFAQWRKGLGVPAP--AQV---PRDENWQTLAGRSASDWQTLPGIGATRATQLANFFTHEQVQR 545
146284243 511 ARANKLAASFARARQRPLAQWLKALGLPAKq------lPPAADWDALAARDLAQWQAEAGVGPARAKQLQAFFRAAELPA 584
66048020  473 RSSAKLLDSLQTARERPFQTWLKAIGLPPT--GGA---RLPDNWHELAGRSVEQWQAEPGIGPGRAARLRAFFQDPQVQA 547
28867612  473 RSSDKLLDSLQTARERPFQTWLKAIGLPPA--GNA---KLPDNWHDLAERSVEQWQAEPGIGPGRAAKLRAFFQDPHVQA 547
104783946 470 ARAERLLQAFSLGRRQPFERWLRGLGLPAP--SHF---SPGADWSALASRNIEQWLAEPGVGAVRAAQLQAFLSHEQVQA 544
92113642  578 WLASLestrALQKQHGT 594
146305490 541 LGRQL----QQAGVAGF 553
167036006 545 IATRL----AESGIEGF 557
26991646  545 IAAQL----AEAGIEGF 557
148550043 545 IAAQL----AETGIEGF 557
170719684 546 IATLL----GTRGIDGF 558
146284243 585 LRERL----RAVGVPGT 597
66048020  548 LSQQL----QAQSISGF 560
28867612  548 LSQQL----QAQGISGF 560
104783946 545 LARRL----RAHEIEGF 557
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