Conserved Protein Domain Family
PBP2_iGluR_putative

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cd13717: PBP2_iGluR_putative 
The ligand-binding domain of putative ionotropic glutamate receptors, a member of the type 2 periplasmic binding fold protein superfamily.
This group contains glutamate receptor domain GluR. These domains are found in the GluR proteins that have been shown to function as L-glutamate activated potassium channels, also known ionotropic glutamate receptors or iGluRs. In addition to two ligand binding core domains, iGluRs typically have a channel-like domain inserted in the middle of the GluR-like domain. Animal iGluRs mediate the ion flux in the synapses of the CNS and can be subdivided into several classes depending on the neurotransmitter specificity and ion conductance properties. Their plant homologs have been shown to function in light signal transduction and calcium homeostasis. The GluR proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270435
Aligned: 31 rows
Threshold Bit Score: 514.926
Created: 24-Jun-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the non-NMDA iGluR family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                             #           
NP_727328     383 RRFFRIGTA----ESIPWSYLrreegtgelirdrsglPIWEGYCIDFIIRLSQKLNFEFEIVAPEvghMGELNelGEWDG 458  fruit fly
EEB19912      351 KRFFRIGVVp---GEIPWSYQekdf--------ktgeLIWKGYCVELTEKLSELMNFDYEFSSPKsgkYGKRLpnGKWDG 419  human body louse
CAZ35444     1500 NYHGRIWNNesfkQDPPYAVRlg-------------rNKWTGYCVEVFEEIARRLNIAYEFVEQTdgdYGTRLenGRWSG 1566 Schistosoma m...
XP_968346     203 TPFFRIGIT----HALPWSYKetds---------sgnTYWTGYCVDFTEELSKLMGFGYEFVEPKsgtFGKKRd-GVWDG 268  red flour beetle
EAA07123      300 KRFFRVGTT----ESIPWAYRkrdpngnilrnsttgePIWEGYCIDFLHQLSVVMNFDYDLVSPRngtFGLRDadGKWDG 375  Anopheles gam...
XP_001656173  380 KRYFRVGTT----ESIPWAYRkrdpltneimlnyvgePIWEGYCIDFLHQLSTVMNFDYDLVSPQkgtFGMRDrsGNWNG 455  yellow fever ...
XP_311538     300 KRFFRVGTT----ESIPWAYRkrdpngnilrnsttgePIWEGYCIDFLHQLSVVMNFDYDLVSPRngtFGLRDadGKWDG 375  Anopheles gam...
XP_001870384  352 KRYFRVGTT----ESIPWAYRqrdpqtgeiildeagqPIWEGYCIDFLRQLSKVMSFDYDLVWPKkgtFGMRDkaGNWDG 427  southern hous...
XP_001991512  376 RRFYRIGTA----ESLPWSYYrrdpnsgellrtptgaPIWEGFCIDFIEALANMLNFDYELVAPQkghMGERNeqGEWDG 451  Drosophila gr...
XP_002055415  400 RRFFRIGTA----ESLPWSYYrrnpdtgellrtrngdPIWEGYCIDFMERLAEKLNFGYEIVAPKqghMGERNelGEWDG 475  Drosophila vi...
Feature 1                        ###    #                                                         
NP_727328     459 VVGDLVRGETDFAIAALKMYSEREEVIDFLPPYYEQTgISIAIRKPVrr-tsLFKFMTVLRLEVWlsivaalvgtaimiw 537  fruit fly
EEB19912      420 LVGDLARGETEIAIGALTMTSEREEIIDFVSPYFHQTgISIMIRKPIrp-tsLFKFMTVLRIEVWmsilgalsvtgimiw 498  human body louse
CAZ35444     1567 MIGQVSRKNTDIGLGPLVLDAEKSLIVDFTVPYYESVgITMVSKINEdlklgALFFLDVFTWDVWitavvavfiigflla 1646 Schistosoma m...
XP_968346     269 VVGDLATGETDLAITALIMTADREEVIDYVAPYFEQTgITIVMRKPVrk-tsLFKFMTVLKLEVWlsivgalivtgfmvw 347  red flour beetle
EAA07123      376 LVGDLVVGEIDFAIASLKMTAEREEVVDFVAPYFEQTgILIAMRKPVre-tsLFKFMTVLRLEVWlsillaivatavmlw 454  Anopheles gam...
XP_001656173  456 LIGDLVVGEIDFAMAAIKMTAEREEVVDFVAPYFEQTgILIVMRKPIre-tsLFKFMTVLRLEVWlsillaivatavmlw 534  yellow fever ...
XP_311538     376 LVGDLVVGEIDFAIASLKMTAEREEVVDFVAPYFEQTgILIAMRKPVre-tsLFKFMTVLRLEVWlsillaivatavmlw 454  Anopheles gam...
XP_001870384  428 LIGDLVVGEIDFAMASMKMTAEREEVVDFVAPYFEQTgILIVMRNPVre-tsLFKFMTVLRLEVWlsillaivatavmlw 506  southern hous...
XP_001991512  452 VIGDLVSGETDFAIAALKMYSEREEVVDFLPPYYAHTgISIVMRKPLrl-asLFKFMSVLRPEVWlsivgalmatalliw 530  Drosophila gr...
XP_002055415  476 VIGDLVSGETDFAIAALKMYSEREEVVDFLPPYYEQTgISIVMRKPMrr-tsLFKFMTVLRLEVWlsivaalvgtalmiw 554  Drosophila vi...
Feature 1                                                                                         
NP_727328     538 fmd--kyspyssrnnrqaypyacREFTLRESFWFALTSFTPQGGGEAPkaisGRMLVAAYWLFvvLMLATFTANLAAFLT 615  fruit fly
EEB19912      499 lld--kyspysarnnkemypypcREFTLKESFWFALTSFTPQGGGEAPkalsGRTLVAAYWLFvvLMLATFTANLAAFLT 576  human body louse
CAZ35444     1647 fidkyspysyqnqpkkgdgesmgTVFTVKESLWYVLGSCTQQGEYMDPrsasTRVLVAGLWLLvlIIIAMFSANLAAKLT 1726 Schistosoma m...
XP_968346     348 fld--kyspysarnnkkaypyptREFTLKESFWFALTSFTPQGGGEAPkalsGRTLVAAYWLFvvLMLATFTANLAAFLT 425  red flour beetle
EAA07123      455 lld--kfspysaknnkdaypyecRKFTLKESFWFALTSFTPQGGGEAPkalsGRTLVAAYWLFvvLMLATFTANLAAFLT 532  Anopheles gam...
XP_001656173  535 lld--kfspysaknnkqaypydcRDFTLKESFWFALTSFTPQGGGEAPkalsGRTLVAAYWLFvvLMLATFTANLAAFLT 612  yellow fever ...
XP_311538     455 lld--kfspysaknnkdaypyecRKFTLKESFWFALTSFTPQGGGEAPkalsGRTLVAAYWLFvvLMLATFTANLAAFLT 532  Anopheles gam...
XP_001870384  507 lld--kfspysaknnkqaypyecRDFTLKESFWFALTSFTPQGGGEAPkalsGRTLVAAYWLFvvLMLATFTANLAAFLT 584  southern hous...
XP_001991512  531 ild--ryspyssrnnpdaypyecRQFTLRESFWFALTSFTPQGGGEAPkalsGRILVASYWLFvvLMLATFTANLAAFLT 608  Drosophila gr...
XP_002055415  555 fmd--kyspyssrnnrdaypyecREFTLRESFWFALTSFTPQGGGEAPkaisGRLLVAAYWLFvvLMLATFTANLAAFLT 632  Drosophila vi...
Feature 1                                 #  ###                                                  
NP_727328     616 vermqtPVQSLEQLARQsrINYTVVKDSDTHQYFVnmkfaedtlyrmwkelalnaskdfkKFRIWDYPIKEQYghillai 695  fruit fly
EEB19912      577 vermksPVESLEQLARQsrINYTVVRNSDTHSFFVnmkkaedtlyqawknlalnatsdetQFRVWDYPIKEQYghillai 656  human body louse
CAZ35444     1727 vsglqgEINTFKKLIEQkeVKYTVRSNSSELKFFErlrsaeesifemwkqkvvynneftaNYTVWQYPVTEKYgllysrm 1806 Schistosoma m...
XP_968346     426 vermqtPVQSLEQLAKQsrINYTVVKDSDTHKYFInmkhaedtlyrmwkeltlnastddtQYRVWDYPIREQYghillai 505  red flour beetle
EAA07123      533 vermqtPVQSLEQLSRQsrIKYTVVKDSDTHDYFRnmknaedvlyqmwrnltlssgndqaQYRVWDYPIKEQYinilsai 612  Anopheles gam...
XP_001656173  613 vermqtPVQSLEQLSRQsrIKYTVVKDSDTHDYFKnmknaedvlyrmwrnltlssgndqtQYRVWDYPIKEQYtnilaai 692  yellow fever ...
XP_311538     533 vermqtPVQSLEQLSRQsrIKYTVVKDSDTHDYFRnmknaedvlyqmwrnltlssgndqaQYRVWDYPIKEQYinilsai 612  Anopheles gam...
XP_001870384  585 vermqtPVQSLEQLSRQsrIKYTVVKNSDTHDYFKnmknaedvlyqmwrnltlssgndqaQYRVWDYPIKEQYinilsai 664  southern hous...
XP_001991512  609 vermqvPVRSLEQLARQsrINYTVVNNSDTHHYFInmkfaedtlyrmwkelalnasedfhKFRIWDYPIKEQFgkilvai 688  Drosophila gr...
XP_002055415  633 vermqtPVQSLEQLARQsrINYTVVKDSDTHHYFMnmkfaedtlyrlwkelalnasrdfrKFRIWDYPIKEQFghillai 712  Drosophila vi...
Feature 1                                     #                         #                         
NP_727328     696 nsSQPVADAKEGFANVDAHenadYAFIHDSAEIKYEITRnCNLTEVGevFAEQPYAVAVQQGSHLGDELSYAILELQKDR 775  fruit fly
EEB19912      657 eqTGLVDNETVGIQKVLESetgeFAFIHNEAIIKYEVYKnCNLTEVGevFAERPYAVAVQQGSVLQEEISRRILDLQRER 736  human body louse
CAZ35444     1807 reWGFSNSHEETMKLINDG----WVIFMETPKADYYIANeCKLKRFGnrIGSWYYSMILIPRSPLTSAFNEMIYSLEADY 1882 Schistosoma m...
XP_968346     506 ndSNPVANASEGFRIVNEHtdadFAFIHDSSEIKYEISKnCNLTEVGevFAERPYAVAVQQGSHLQDEISKTILNLQKDR 585  red flour beetle
EAA07123      613 esANPVATAAEGFRRVNERldadFAFIHDSAEIRYEISRnCNFTEVGevFAEQPYGIAVQQGSHLQDELSYFILELQKER 692  Anopheles gam...
XP_001656173  693 esANPVQSAEVGFQRVNEGleadFAFVHDSAEIKYEISRnCNLTEVGevFGEQPYAIAVQQGSHLQDELSYYILELQKER 772  yellow fever ...
XP_311538     613 esANPVATAAEGFRRVNERldadFAFIHDSAEIRYEISRnCNFTEVGevFAEQPYGIAVQQGSHLQDELSYFILELQKER 692  Anopheles gam...
XP_001870384  665 esAKPVDSAEAGFKRVNERleadFAFVHDSAEIKYEISRnCNLTEVGevFAEQPYAIAVQQGSHLQDELSFYILELQKER 744  southern hous...
XP_001991512  689 gtSNPVHNASEGFKNVEDHlnadYAFIHDSAEIRYAVSKnCNLTEIGevFAEQPYAVAVQQGSHLGDELSYAILMLQKER 768  Drosophila gr...
XP_002055415  713 nsSKPVQNATEGFEKVDAHgnadYAFIHDSAEIKYEVTRnCNLTEVGevFAEQPYAVAVQQGSHLGDELSYAILELQKDR 792  Drosophila vi...
Feature 1                    
NP_727328     776 FFEELKAKYWN 786  fruit fly
EEB19912      737 YFEMQTAKFWN 747  human body louse
CAZ35444     1883 TLDMLRAKWWA 1893 Schistosoma mansoni
XP_968346     586 FFEQLQAKYWN 596  red flour beetle
EAA07123      693 YFESLTAKFWN 703  Anopheles gambiae str. PEST
XP_001656173  773 YFESLTAKFWN 783  yellow fever mosquito
XP_311538     693 YFESLTAKFWN 703  Anopheles gambiae str. PEST
XP_001870384  745 YFESLTAKFWN 755  southern house mosquito
XP_001991512  769 FFENLKEKYWN 779  Drosophila grimshawi
XP_002055415  793 FFEQLKAKYWN 803  Drosophila virilis

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