6ZCA


Conserved Protein Domain Family
RpoY

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pfam07288: RpoY 
RNA polymerase epsilon subunit
RNA polymerase in bacteria is a multisubunit protein complex that is essential for gene expression. This entry represents the epsilon subunit encoded by the rpoY gene. The structure of epsilon shows simple beta sheet with an alpha helix running diagonally along the back of the structure forming a beta-beta-alpha-beta fold.
Statistics
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PSSM-Id: 462135
Aligned: 40 rows
Threshold Bit Score: 86.4633
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6ZCA_E         2 IYKVFYQEKADEVPVREKTDSLYIEGVSERD------VRTKLKEK--KLNIEFITPVNGAFLEYEQQSENFKVLE 68  Bacillus subtilis
Q8DXT6         2 IYKVFYQETKERNPRREQTKTLYVTIDAANElegriaARKLVEENt-AYNIEFIELLSDKHLEYEKETGVFELTE 75  Streptococcus agalac...
bgi:05SSU0162 13 IYKVFYQESKI-SPRREQTRALYLDIDAASElegriiARELVETNrpEYNIEFIDLLSDNHLEYEKEHADFKITE 86 
Q9CIR5         2 IFKVFYQKDNTRSPRRETTEALYLDLDVATKeegvilARELLAKNt-AYHVEFIDSLSDESVEYEKETGVFEITS 75  Lactococcus lactis s...
Q8DVU6         2 IYKVFYQETKDSSPRREQTKTLYLDIDAQTEldgriqARQLVEEKi-AYNIELIELLSDKHLEYEKETGAFQLTE 75  Streptococcus mutans...
B9DVR0         2 IYKIFYQETKERSPRREKTQALYLEIDAETElegrikARKLIEEKt-AYNVEYIELLSDKHLEYEKETGVFALTE 75  Streptococcus uberis...
Q38WN9         2 IYKVLFQADKTQSPLREATKSLYLEANSAVE------ARQLVEDNt-PYNIEFVQELTGEHLAYEQESEDFKLTE 69  Latilactobacillus sa...
Q5FKT3         2 IYKVLYQKDKIVNPRRETTQTLYMEADNMVE------ARTMVEDNt-PYNIELIQELTGNSLTYEKEHADFKLTK 69  Lactobacillus acidop...
WP_010050604   2 IFKITYQETKGRNPKREDTKALYVETEDAVQ------ARKLVEENt-PYNIEFVQPVEGKHLAYEQQSPEFEITE 69  eubacteria
Q8DRH6         2 IYKVFYQETKERSPRRETTRTLYLDIDASSElegritARQLVEENrpEYNIEYIELLSDKLLDYEKETGAFEITE 76  Streptococcus pneumo...
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