2GSC,2RLD


Conserved Protein Domain Family
23S_rRNA_IVP

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pfam05635: 23S_rRNA_IVP 
23S rRNA-intervening sequence protein
This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.
Statistics
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PSSM-Id: 461698
Aligned: 346 rows
Threshold Bit Score: 36.2853
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2GSC_E            12 ERLDAWRDSMELVEMIYR-LTeVFPDqERYGLTAQLRRAAVSIPSNIAEGAARRSTP-DYSRFLSIARGSLSELDTQVQI 89  Xanthomonas...
WP_015166748       7 ISIKAYKLSETVADDVWRmVN-EWEPlAQNSIGKEAIVAADNIGANISQAVGCQYVA-GYQHGLRMARAAVFATRHWLRR 84  Pseudanabae...
Q3A3M3             7 EELRVYQLSEKLADDIWKiVS-EWDYmAKDTVGKQLVRAVDSVGANIAEGTGRGSYQ-DNRRFVRIARGSLYEVRHWLRR 84  Pelobacter ...
jgi:Mic7113_2867   7 EHLQIYKLAESLADEIWDiAG-NWEQfAKDTIGKQIVLSVDSIGANIAEGTERHNFA-DHQRYIRQALSSLNETRYWLRR 84 
jgi:Ple7327_0957   7 EKLQIYQLAEQLADEIWFiVK-NWDEfERNTIGRQIVRSADSIGANIAEGNGRHNFR-DNKRFIKIARGSLNETRHWLRR 84 
WP_015224579       5 EDLQIYQIAEKLANKIWLiVS-KWDYfAKDTIGKQLVRSVDSIGANIAEGNGRYNHK-DKERFIKIARGSLYETRHWLRL 82  Halothece s...
jgi:Riv7116_3945  23 ENLQVYQLAEKLANKIWNiVQ-EWKQfEKDTVGKQIVRSADSVCANIAEGRGCFNDQ-DNRRFIRISRGSLYETICFLRL 100
jgi:Riv7116_1243   7 ENLRVFQLAEKLADYVWNiVI-FWNQlATDTVGKQIIRSADSIGANIAEGSGRYNFK-DNLRFVKIARASLHETRYWLRR 84 
jgi:Pse7367_3690   5 LELEIYQLAERLANAVCNaVS-SWENfHKYSLGQQMVRSADSIGANIAEGYGRHSLA-DQARFVVIARGSLYETMHWYRL 82 
WP_022747058     147 RTLKAYEKMIVFYTRLYAvLG-KLPFfEQYSVFSQTQRAAESIIANLAEGNARQPYKlVVANFYSIALASAVEVQAWLDI 225 Clostridium...
2GSC_E            90 AARLGYSRSEDDQSVRRQVDLVFAKLTA 117 Xanthomonas campestris pv. campestris
WP_015166748      85 AYYRNLATERQADRIKRNLEEILRHLES 112 Pseudanabaena sp. PCC 7367
Q3A3M3            85 AYNRGLLTEDHILSTKLLLQELAPKLNA 112 Pelobacter carbinolicus DSM 2380
jgi:Mic7113_2867  85 AYTRHLLTREQIKKLKPIVDELSLKLNT 112
jgi:Ple7327_0957  85 AYVRKLLTSDRVNQLKPIVNDLSIKLNA 112
WP_015224579      83 AFARNLLAREDIDKIKPLVEELSPKLNA 110 Halothece sp. PCC 7418
jgi:Riv7116_3945 101 AYTRKMLTKEQSLKLKPIIDELSPKLNA 128
jgi:Riv7116_1243  85 AYTRKLLTNEQINVIQPIVDELSPKLNA 112
jgi:Pse7367_3690  83 GCDRQLWEGEEQRALQEMLDELAPRLNA 110
WP_022747058     226 MSIKKYISEEEHRVFDSMLEEVKRLIIV 253 Clostridium saccharobutylicum
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