1OQK,2KI7,1TSF


Conserved Protein Domain Family
POP4

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smart00538: POP4 
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A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins.
Statistics
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PSSM-Id: 197780
Aligned: 16 rows
Threshold Bit Score: 99.6504
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1OQK_A              6 ITPRNIFRHELIGLSVRIARSVHRDIQGISGRVVDETRNTLRIEMDD---GREITVPKGIAVFHFRTPQg------ELVE 76  Methanothe...
NP_006618         125 MIQAKLLKADLHGAIISVTKSKCPSYVGITGILLQETKHIFKIITKE---DRLKVIPKLNCVFTVETDG-------FISY 194 human
FlyBase:CG8038-PA 111 EFSRKLVKLDLHGAKMKVLQSKCSTLENLAGICVMDTKNVLKLLGKD---HRLRTIPKSECVFGMKVGN-------MEFT 180 fruit fly
CAB66445          118 SLMAKLAKAEYQGAYMQVLRSKSTTRVGLEGICIHESKHMLSLITKE---NRVVRVPKQDSVMKVIVDVpq---rkLVFE 191 fission yeast
O24785              4 ITPESLPRHELLGLHARVAADTDQSRVGIAGRVVDETMQTVVLRTAS----GVAQVPKKGATFEFRLTDe------AAAP 73  Halobacter...
P22527              3 LTPETLPRHELVGLDCEVVAASNPDVIGISGTVVMETTQMLTLEGAD----RVWHVPKDSATFAFDLST-------ETVL 71  Haloarcula...
O28362              5 LQGVELIARDWIGLMVEVVESPNHSEVGIKGEVVDETQNTLKIMTEK----GLKVVAKRGRTFRVWYKG-------KIMR 73  Archaeoglo...
NP_147179           7 SHRRQLIPPLLTGLRVKVLAHSDPSLEGLEGWVVVEEARSLRILTLE---GRVSTVLKDLAVIEVEAPGg------EYIR 77  Aeropyrum ...
NP_009816         168 LALLKLSMADYNGALLRVTKSKNKTLIGLQGIVIWDSQKFFIMIVKGniiDEIKCIPKKGTVFQFEIPIsddddsaLRYS 247 Saccharomy...
2KI7_A             38 VNKKNIVWHELIGLKVRVVNSTHPGYVGIEGYVIDETRNMLVIAG-E---NKVWKVPKDVCIFEFETWDg------TKIK 107 Pyrococcus...
1OQK_A             77 IDGRALVARPEERIKKKFRKP 97  Methanothermobacter thermautotrophicus
NP_006618         195 IYGSKFQLRSSERSAKKFKAK 215 human
FlyBase:CG8038-PA 181 IFGQHLNIRPAERSVKKIKNF 201 fruit fly
CAB66445          192 LYTQHLLLRAGDRSNKRFKSK 212 fission yeast
O24785             74 DNGVGTAFKPAGGETRQTTGE 94  Halobacterium sp. NRC-1
P22527             72 VDGDRLVARPARRTENTGDSL 92  Haloarcula marismortui ATCC 43049
O28362             74 IKGDLINFRPEDRIKRGLMML 94  Archaeoglobus fulgidus DSM 4304
NP_147179          78 ISGRVLIGNPLDRVKEYRWRV 98  Aeropyrum pernix K1
NP_009816         248 ILGDRFKYRSVDRAGRKFKSR 268 Saccharomyces cerevisiae S288c
2KI7_A            108 ISGEKLVGRPEMRLKKRWRK- 127 Pyrococcus furiosus DSM 3638
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