Conserved Protein Domain Family
EVM-1-like_MBL-B3

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cd16315: EVM-1-like_MBL-B3 
Erythrobacter vulgaris EVM-1 and related metallo-beta-lactamases, subclass B3; MBL-fold metallo-hydrolase domain
MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. This subgroup EVM-1-like MBLs belongs to the B3 subclass. Subclass B3 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile. These B3 enzymes have a modified Zn2/DCH site (Asp-His-His).
Statistics
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PSSM-Id: 293873
Aligned: 17 rows
Threshold Bit Score: 380.156
Created: 20-Aug-2015
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:active site [active site]
Evidence:
  • Comment:based on Serratia marcescens SMB-1 metallo-beta-lactamase bound to the inhibitor mercaptoacetate and two zinc ions in the active site

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                        # # ##       
EZP83821   68 WADPAPPARIFANTWYVGTCGISAILVTGDKGHVLVDAGVTKAAPLVLANIRRAGFNPRDVRWIVASHEHFDHVGALAAL 147 Novosphingobium re...
EQB17678   62 WAEAAPPAKLFGNTWYVGTCGISAILVTGTDGHVLIDGGLPEAAPLVLANIAAAGFKARDVRWILSSHEHFDHAGALAAL 141 Novosphingobium li...
AFN85388   60 WDKPAPPFQLMGNSWYVGTCGISAVLITGEDGHILIDSGVPEAAPLVLANIASLGFDAKDVRYLLMSHEHFDHVGAHAAI 139 Erythrobacter aqui...
EHJ59192   49 WSHPAPPAHIYGNTWYVGTCGIASILVTSDDGHVLIDSGPADAAPLVLANIRKLGFDPADVRWILTSHEHHDHAGSIAEL 128 Novosphingobium pe...
ENY81800   39 WSDPAPPAKLFGNTYYVGTCGITALLIDAPAGPILIDAATAEAAPAILANIRALGFDPKRIRAILTSHEHFDHVGGLAAL 118 Sphingopyxis sp. MC1
KLE35719   45 WVAPAPPVHVFGNTYDVGTCGITALLVTSPDGHVLLDSGMPEAADLVLANIAALGADPADVEWVLSSHEHLDHVGATAEI 124 Erythrobacter sp. ...
AFV00127   43 WDKPGPPFRVLGNTYYVGTCGIAAILITGDAGHVLIDSGTDRGAVIVRDNIARLGFSLSDVKILLHSHEHIDHVGGMASL 122 Simiduia agarivora...
CCW17713   37 WSDPAPPIRIFANIYDVGSCGITVLLITGSKGHVLIDAATAPAIPSIIANIERLGLRPTDVRFLLSTHEHVDHVGGLHDI 116 Sphingobium japoni...
KHS46795   37 FSDPAPPARIFGNVWYVGTCNVSVLLITGPQGHILVDAAVEEAVPQILANIRKLGFNPKDIGLIVSSHEHFDHVGGLAAL 116 Novosphingobium su...
GAB58916   50 WDKAGPPYQIYGNSYYVGTCGISAILITGADGHILIDGATAAGAEVIAANIRTLGFSLQDVKLLLQSHEHFDHVAGLAQL 129 Rheinheimera nanha...
Feature 1                                 #                                     #             
EZP83821  148 QQaTGAKVAALPAQKAALASGKpSADDPQFAg-lDPIAPVRVDRVLKDGDTVTVGNLVLTAHATPVHAPGSTSWTWTSCA 226 Novosphingobium re...
EQB17678  142 QRaTGARVAALPAAAQVLETGEaDPEDPQFGg-lDAFPAVRVDRHLADGEHVAVGKLSLTAHATLAHAAGSTSWTWRACD 220 Novosphingobium li...
AFN85388  140 KEaTGAQVLASVRAKPVLETGKvAADDPQAAsghPDMTPVKVDRVIGDGEILDLGNLRVTAHETPGHSPGALSWTWWSCS 219 Erythrobacter aqui...
EHJ59192  129 QKaTGAQIAAVASARQVLESGKpSADDPQSGl-iEGFPPVHVARVLVDGDSVTLGRLALTVRETPAHSPGSASWTWQACD 207 Novosphingobium pe...
ENY81800  119 HAaTGAPVIALADAAPQLESGTpDPRDPQRGa-vDSFTGVPVAQRLRDGQPLAFADIRITAYATPGHTPGSTSWTWQSCE 197 Sphingopyxis sp. MC1
KLE35719  125 LRrTGARAAVLAAAAPQMASGQpLPEDPQAGg-iPPFEGFPVARAMQDGETLRVGSLAFTVHANPAHTPGSASWTWRSCE 203 Erythrobacter sp. ...
AFV00127  123 QSlSGATLYASPAAAAVMRNGTaGEDDPQAGa-lASFPVARVGGLVNDGDQIALGNLRLTAYATPGHTPGALSWQWRACE 201 Simiduia agarivora...
CCW17713  117 QQrTGATLIASAAARPMLESGTpASDDPQRGd-iPDFTGARVGRIVKDGDVVALGSLRLTAHLTPGHSPGGTSWSWTACT 195 Sphingobium japoni...
KHS46795  117 EKaTGARFVATAEAAKVIRSGKvSPADPQAQe-iHGSRPARVDFALKTGDVFSVGPLKITAFQTPGHTEGSTSWHWKSCE 195 Novosphingobium su...
GAB58916  130 QQlSGAKLLASPVAAPVLSSGVvNAADPQAGm-hEPFPAARVDGLVTAGQQVTLGKLSLLPVATPGHTPGALSWQWTSCE 208 Rheinheimera nanha...
Feature 1                    # #                                     #                        
EZP83821  227 Pk---AGCRKIAYADSSSTISSDGYRFTDHPARVAAIRKGLPVMAALPCDVLLTPHPGQSDMMERFAGtkpLADKNACPA 303 Novosphingobium re...
EQB17678  221 Eq---KQCLTVAYADSASAISAKGYRFTDHPVRVEAVRKGLDRIATLPCDLLITPHPGASDLFARLSGaapLVDPAACRR 297 Novosphingobium li...
AFN85388  220 LpgepPVCNRFAYVDSLSAVSADDYRFTDHPEMVRAFRTSIDKARMLQCEFLVTPHPSAGSMLDLMSGehgLYLHKGCGF 299 Erythrobacter aqui...
EHJ59192  208 Ea---FTCRMIAYADSATTISADDYRFSDHPDRIARIRTGLSRIAQLPCDILVTPHPSASNLFDRLSGkapLVNAQACAA 284 Novosphingobium pe...
ENY81800  198 G----SACRTIAYVDSLTAISADGYRFSDHPDYVAMLRATFAKVPTLPCDILVTPHPGASNLFARLAGeapLAAADGCAA 273 Sphingopyxis sp. MC1
KLE35719  204 D----GVCRTMAYADSLSTPAAEGYRFSDHPDYVAQVRRGFAAVAALPCDILLTPHPSQSAMDERLASg-dLAVPQACAT 278 Erythrobacter sp. ...
AFV00127  202 E----DRCTTLVYADSLSPVSAEGYRFNAHPEYLQAYRLGLATLADLECDLLLTPHPSASQMRQRLSErqsLAVPDACRQ 277 Simiduia agarivora...
CCW17713  196 G----KSCRRIVYADSLSAVSADAYRFTDHPAYVARLRATIAKVAALRCDLLITPHPGSSNLYDRLAGkapLIDSKACAA 271 Sphingobium japoni...
KHS46795  196 G----TDCRTITYVDSLTALPLGTYRFADHPERVAMFRKTFAQVEALECGVLLTPHPSASAMFERMSGsepLADPDACKA 271 Novosphingobium su...
GAB58916  209 A----QQCKVLVYADSLSPVSSDSYRFSQHLSYLQAYRAGLDKLAALECQILLTPHPSASDMRTRLQSstgLTDANGCVL 284 Rheinheimera nanha...
Feature 1                  
EZP83821  304 YAKFAEGRLAQRL 316 Novosphingobium resinovorum
EQB17678  298 YAATAKARFETRL 310 Novosphingobium lindaniclasticum LE124
AFN85388  300 YAKRLSKRLDERL 312 Erythrobacter aquimaris
EHJ59192  285 YSQAAGSYFAKRL 297 Novosphingobium pentaromativorans US6-1
ENY81800  274 YAAAAGKRLDDRL 286 Sphingopyxis sp. MC1
KLE35719  279 YARGAEARFDALL 291 Erythrobacter sp. KA37
AFV00127  278 YATGISARLAQRL 290 Simiduia agarivorans SA1 = DSM 21679
CCW17713  272 YAATARKTLDQRL 284 Sphingobium japonicum BiD32
KHS46795  272 LAAGARDRLEKAL 284 Novosphingobium subterraneum
GAB58916  285 YSQAVKQRLQKRL 297 Rheinheimera nanhaiensis E407-8

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