2NMB,1P5T,1X11,3SO6,1SHC,3D8D,2CY4,3HQC,1NU2,3DXC,2EJ8,1XR0,1QQG,1J0W,1DDM,1OQN,1M7E,2YT2,2YS5,1QQG,1IRS


Conserved Protein Domain Family
PTB

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cd00934: PTB 
Click on image for an interactive view with Cn3D
Phosphotyrosine-binding (PTB) PH-like fold
PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to bind peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains.
Statistics
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PSSM-Id: 269911
Aligned: 82 rows
Threshold Bit Score: 35.1771
Created: 1-Nov-2000
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide bindingphosphoinosit..
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide binding site [polypeptide binding site]
Evidence:
  • Structure:1NU2; Mouse Dab1 PTB domain binds peptide from the ApoER2 tail
  • Comment:Dab1 PTB has preference for unphosphorylated tyrosine within the NPxY motif
  • Structure:2NMB; Drosophila Numb binds a Phosphotyrosine peptide, contacts at 4A
  • Comment:Phosphotyrosine peptide contains the Gly-Pro-(p)Tyr motif
  • Comment:Numb binds diverse peptide motifs
  • Citation:PMID 9846878
  • Structure:1DDM; Drosophila Numb binds Nak (Numb-associated kinase) peptide, contacts at 4A
  • Structure:1X11; Human X11 Ptb domain binds betaAPP peptide
  • Comment:beta-amyloid precursor protein (betaAPP)
  • Citation:PMID 9321393
  • Structure:3DXC; Human Fe65-Ptb2 binds APP, contacts at 4A
  • Comment:Alzheimer disease amyloid precursor protein (APP)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
2NMB_A         30 CSFSVKYLGcvevfesrgmqvce-------ealkvlrqsrrrpvRGLLHVSGDGLRVVDDetk---------------gl 87   fruit fly
1P5T_A          6 SQFWVTSQKteaser------------------------cglqgSYILRVEAEKLTLLTLgaqsq-----------ilep 50   house mouse
1NU2_A         18 VRYKAKLIGidevsaargdklcqdsmmklkgvvagarskgehkqKIFLTISFGGIKIFDEktg---------------al 82   house mouse
1XR0_B         12 NKFKVINVDddgn----------------------------elgSGIMELTDTELILYTRkr-----------------d 46   human
1QQG_B        159 EVWQVILKPkglgqt------------------------knligIYRLCLTSKTISFVKLnse---------------aa 199  human
1J0W_A          5 ERFNVYLXPspnl---------------------------dvhgECALQITYEYICLWDVqnp--------------rvk 43   human
XP_420818     112 HRFQVFVAPgtkl----------------------------esgPATLHFCNDILVLAKDlpp---------------sv 148  chicken
2YT2_A         19 TKFKVTNVDdegv----------------------------elgSGVMELTQSELVLHLHrr-----------------e 53   human
2YS5_A         19 TKFKVTNVDdegv----------------------------elgSGVMELTQSELVLHLHrr-----------------e 53   human
XP_001603609  128 HIWQVIMQKkglger------------------------knitgPYRLCLTDRVLSLVKLgaddksdsiefsxxxxxxxx 183  jewel wasp
Feature 1                 ######                                      #                         # 
2NMB_A         88 IVDQTiekVSFCAPDrn--------------------------heRGFSYICRDgttrrWMCHGFLACkds---geRLSH 138  fruit fly
1P5T_A         51 LLFWPytlLRRYGRDk-----------------------------VXFSFEAGRrcpsgPGTFTFQTSqg-----nDIFQ 96   house mouse
1NU2_A         83 QHHHAvheISYIAKDit--------------------------dhRAFGYVCGKeg--nHRFVAIKTAqa----aePVIL 130  house mouse
1XR0_B         47 SVKWHylcLRRYGYDs-----------------------------NLFSFESGRrcqtgQGIFAFKCAra-----eELFN 92   human
1QQG_B        200 AVVLQlmnIRRCGHSe-----------------------------NFFFIEVGRsavtgPGEFWMQVDdsv--vaqNMHE 248  human
1J0W_A         44 LISWPlsaLRRYGRDt-----------------------------TWFTFEAGRxcetgEGLFIFQTRdg-----eAIYQ 89   human
XP_420818     149 MGQWKlsdLRRYGAVp-----------------------------NGFIFEGGTrcgfwAGVFFLSCAeg-----eQISF 194  chicken
2YT2_A         54 AVRWPylcLRRYGYDs-----------------------------NLFSFESGRrcqtgQGIFAFKCSra-----eEIFN 99   human
2YS5_A         54 AVRWPylcLRRYGYDs-----------------------------NLFSFESGRrcqtgQGIFAFKCSra-----eEIFN 99   human
XP_001603609  184 WMEVEdnnIAQNMHTainnamtnssstkdegprqrlrsssaneasKPISVLQRRht--aQKLHSFSPLeeqrmhedQVAP 261  jewel wasp
Feature 1           #   
2NMB_A        139 AVGCAF 144  fruit fly
1P5T_A         97 AVEAAI 102  house mouse
1NU2_A        131 DLRDLF 136  house mouse
1XR0_B         93 MLQEIM 98   human
1QQG_B        249 TILEAM 254  human
1J0W_A         90 KVHSAA 95   human
XP_420818     195 LFDCIV 200  chicken
2YT2_A        100 LLQDLM 105  human
2YS5_A        100 LLQDLM 105  human
XP_001603609  262 LQEQNV 267  jewel wasp

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