5EQ4,6EFD


Conserved Protein Domain Family
aRib

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pfam18938: aRib 
Atypical Rib domain
This entry contains atypical Rib (aRib) domains. These are found in a variety of bacterial cell surface proteins. These proteins share a conserved motif with the Rib domain (YPDXXD). The structure of the aRib domain has been solved from two proteins, the SrpA adhesin and the GspB adhesin. In these proteins this domain has been termed the unique domain due to its lack of similarity to any other known structures at the time. The aRib domain from SrpA has been shown to mediate a dimer interaction. This family has been added to the E-set clan based on its similarity to the Rib domain, although it does not contain the Ig fold.
Statistics
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PSSM-Id: 465921
Aligned: 68 rows
Threshold Bit Score: 46.8305
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5EQ4_C        127 YNPADPt--ITYVDRLSSLSPSEKNAVEAAVRAANPq----iPAAARITVSANGTVTITYPDSSTDT-ITANRVVKDL 197  Streptococcus s...
Q5HPA2        325 SRDQLQ-----LVTDPSSLSNSEREEVKRKISEANAnirsyllQNNPILAGVNGDVTFYYRDGSVDV-IDAENVITYE 396  Staphylococcus ...
EKY10065      411 FNLVIPk--KIEVKNPADLSNSEKSALKDSLISKNKt-----lENTAISI-DSVSLNITFPDDSKKA-ISLKKLINAS 479 
KRL62967       59 DSIKMPd--KVTVANQAALSADELAQIKKNIETANP-------NATAI-VNDDGSARVQFIDGSTHDlTSQNTFVSNS 126 
WP_009381981  464 YHILKPe-rSYLVQSRSSLKQDEINRILKDVAYLNPy----lPQGTTFDFKDDLKVVVNYPDCSIDK-IDVSELIQEP 535  Staphylococcus ...
EFR33406      915 FQVKKPe--KTKVENLDSLSPSEKSEIMEKVKKVNS-------QAVTVVVSDEGEVTLVYADGSKNViSPEDTIVLKE 983 
KRL63687     1885 RDTKAPe-tKTEIHNPDSFSKAEQQEIHDQVQQANT-------GATDIKVDDQGNATVTYDDGSQKV-IPGKDTVKDT 1953
WP_009381981   84 VHLNMPt--EVKVQNINYLSQEERNMVHTAFLSRNEh----lPEGSTVYVERDGSLLVKFKDMSYKY-LKNKSYIKAI 154  Staphylococcus ...
WP_025022752  719 AVITVPv--KVQVADANHLTDAEKAQVKKDVLTQNQad---fPSGTNVNVKDDGTVVIKYRDGSTKR-IESHDMVADS 790  Ligilactobacill...
WP_025022752  579 ISINIPkdiNIKVSDRDKLTAKDIKIIIKKLFESNDf-----PEGTKIRVNKDGMIMISFPDGSNTM-ILKSQLFGEE 650  Ligilactobacill...
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