3G27


Conserved Protein Domain Family
YbcO

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pfam07102: YbcO 
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Putative nuclease YbcO
This family includes YbcO (pdbe:3G27), a putative nuclease from E. coli. Proteins in the entry have been predicted to have the His-Me finger nuclease domain and may act as a Recombinase that participates in DNA repair and replication.
Statistics
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PSSM-Id: 429293
Aligned: 10 rows
Threshold Bit Score: 110.581
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3G27_A           2 ADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVD--AGYAKECALE 79  Escherichia c...
WP_025330113     2 SKITRSARGQQCQVRMPGICNGNPETVVFAHYRLAGSCGTGIKPSDLLGAYACSACHDEADRRTTILD--AETAHLYHAE 79  Snodgrassella...
jgi:Fraau_0981   2 SKARQLAKGQPCMIGIAGTCNGDPETTVFARYPMDVYFDIEMSSDDELGAWACSACNAVLVRRPPILEefFLQLRLFHAE 81 
WP_024910287    10 kILCDSARGRCCTLLIPGICNGNPETTVLCHL-PSITHGMSYKSDDYFAVFGCSSCHDVIDGRVP-YDwrPGEKEETYLQ 87  Chania multit...
Q5F7R6           3 SAIRKAAKGGQCTPNIAGVCNDNPETVVLCRF-PGETHGAGLKSGGLGAGFGCGCRRGAIDGRGAGLS--REDKEFYMRR 79  Neisseria gon...
Q1GIK2           9 TKLRTAAKGQPCTLRLP-CCNNNPETTSLCHIRAFGWAGTSEKPMDFLAVFACSDCHDALDRRRN--------GELWGWD 79  Ruegeria sp. ...
WP_007636502     5 NKLRNSARGQECNIRIPSVCNFNPETTILAH--VGSGAGWGGKSRDIEGSFCCSACHDAIDGRTR-TPftAIELKLWAKE 81  Paraglaciecol...
Q32IS8           2 VDLRKAARGQMCTVRIPGYCNHDPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDytKEELRLMHAE 81  Shigella dyse...
jgi:Asuc_1223    4 VDLRKEAKGRDCQVRLPGICNHNPETVVLAHYRIAGLNGVGQKPDDILGAWCCSSCHDECDRRTRKMD--TEFVRLAHAE 81 
Q88ML8           4 TKLTKAARGRECQVRIPGVCNGNPETTVLAHYRLAGTCGVGKKPHDMQGAWCCSACHDACDGRSRAVG--RETARQYHAE 81  Pseudomonas p...
3G27_A          80 GXAR----TQVIWLKE 91  Escherichia coli K-12
WP_025330113    80 GVLR----TQLLLNSQ 91  Snodgrassella alvi
jgi:Fraau_0981  82 GVLR----TQHAIREM 93 
WP_024910287    88 ALHA----TYRQWLED 99  Chania multitudinisentens
Q5F7R6          80 SQLR----TIRRLEAL 91  Neisseria gonorrhoeae FA 1090
Q1GIK2          80 DVTRalgeTLIAQHRM 95  Ruegeria sp. TM1040
WP_007636502    82 GAER----TREHWEQI 93  Paraglaciecola psychrophila
Q32IS8          82 GVFR----TQEIWRKE 93  Shigella dysenteriae Sd197
jgi:Asuc_1223   82 GVMR----TQAILRKE 93 
Q88ML8          82 GVMR----TQALLLNE 93  Pseudomonas putida KT2440
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