Conserved Protein Domain Family
Csy1_I-F

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cd09735: Csy1_I-F 
CRISPR/Cas system-associated protein Csy1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family
Statistics
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PSSM-Id: 187866
Aligned: 18 rows
Threshold Bit Score: 449.083
Created: 23-Nov-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q7NX74        43 QYRPQAWLAD-AARRAGQLQLVTHPVKASHPDARGSSLFVTPeslpprpeagSHHLAS------AASDVVGNAAALDVYK 115 Chromobacterium...
Q1NQR3        60 HYRPANWLDD-AGVRAKQIKMVTHAIKYTHSDAKGSSLYAVDnglpaypadgNVVISTasl-tkPAIDVVGNAAALDVAG 137 delta proteobac...
Q0YSR0        67 SYQLEVWLDD-AAKRVRQITLVTHAIKYQNPDAKGSSLYAAMee-------rDSFCVStaclehPANDVVGNAAALDVYK 138 Chlorobium ferr...
Q5WRV8        41 IFALENWLPN-AAKRAGWMSISTHPCTFSHPSSRKNKNGYVTsiiakaprkaDGYLRSgn--vhVALDALGNAAALDVYK 117 Legionella pneu...
Q9CNW8        51 YYQYDICMSDfAIRMTAQLTFGTHISKGIHPDSRGNNVKFQAtf------iyNEYVGShcl-ktLELDANGDASALPLVA 123 Pasteurella mul...
Q5NPQ4        39 KYDYAIWLED-AARRVGQIHAATHIAKAIHSSAKGSNLYIKPdslpqreeigSHLLGEn-----FDIDVVGNAAALDVFK 112 Zymomonas mobilis
Q02ML9        46 THRREAWLAD-AARRVGQLQLVTHTLKPIHPDARGSNLHSLPqapgqpglagSHELGDr-----LVSDVVGNAAALDVFK 119 Pseudomonas aer...
YP_001562242  42 QHQRDTWMED-AARRVTQIQAVTHSLKPIHPDARGTNLYVEPaslpalqelgSHALGQs-----FAGDVVGNAAALDVYK 115 Delftia acidovo...
YP_996236     44 KYRPTVWIED-AARRVQQIQAVTHSLKPIHPDARGTNLYVEPdslpmltelgSHALGKd-----FAPDVTGNAAALDVYK 117 Verminephrobact...
YP_001555797  58 DFNPVNWLTD-AAKRAKQISLATHAAKFTHSDAKASSILVADtap-----esQTYLNTasl-anKAIDAVGNAAALDVAK 130 Shewanella balt...
Q7NX74       116 FLKLEH-Eg-H-TLLALLRAGDPDLLAALSDDAEQAAAWRDAFCAIAEPs-gGPASHTRaKQIYWPVppesglpanphdd 191 Chromobacterium...
Q1NQR3       138 LLLLEH-Eg-E-TLLDKIKQNDDSALKPFAANKDQLNGWMTEFRKVLDSe--QPSSHTFtKQLYFPLe------------ 200 delta proteobac...
Q0YSR0       139 FLQLSLsDngE-TILSRIFRNDEALRAALPASDEKKERWFQEFSAIRSPk-iLPTTHTLaKQLYFPVg-----------d 205 Chlorobium ferr...
Q5WRV8       118 FLSLVTeDg-K-TIIEHIQQNTEVAKSLLSIKTDSYENLRVGFLEMVSSneaSITSSKI-KQVYFPMg------------ 182 Legionella pneu...
Q9CNW8       124 LFDYIIdDenElTLRELLLADDPRLVGCFADDLELSEQYKKRFQDVLTGevrELATYELnKQLFWVNsvss------ien 197 Pasteurella mul...
Q5NPQ4       113 FLKTKVeD--K-TLLAWAEAGDPDFKAALSENPDQAEEWLSSFAGLLSSd-kKVQSHALmKQLYWLRgedp------tqd 182 Zymomonas mobilis
Q02ML9       120 FLSLQY-Qg-K-NLLNWLTEDSAEALQALSDNAEQAREWRQAFIGITTVk-gAPASHSLaKQLYFPLp-----------g 184 Pseudomonas aer...
YP_001562242 116 FLKVEV-Dg-T-SLLAALLAQDPGALQALHEDPQQAMGLRDAFVGLTQPragAPSSHTRaKQLYWLTg-----------s 181 Delftia acidovo...
YP_996236    118 FLKLQV-Ge-R-SLLTALQEEDPAAMQVLHDDAAQAKALRDKLVGLTQPgsgGASSHSRaKQLYWLTgsda------aad 188 Verminephrobact...
YP_001555797 131 LLKISV-Ng-E-SLIKQLQAQHVDALTAFTQDTELLKEWQLGFARALADe--KLTGHTLtKQLYFPVstaln----gdes 201 Shewanella balt...
Q7NX74       192 S-----HYHLLAPLYSSSLSHWLYQRIQrDRFGEEAKAARQARRDRVDHpRGYSDYPLLAEEKKGGTKPQNISQLNSERK 266 Chromobacterium...
Q1NQR3       201 D-----GYHLVAPLFSSAMADALYKRISfFRYDEVAKEARKAKREARFCpHPVVDFPNTARQNFGGTKPQNISKLNSARG 275 delta proteobac...
Q0YSR0       206 G-----KYHLLAPLFPSALAHEVYLKVQ-TRFDDETKEARKAKRESRYHpHGYRDYPNLAVQNFGGTKPQNISQLNSERR 279 Chlorobium ferr...
Q5WRV8       183 N-----EYHQLSVLSNSGMIFELRERIDaLRFSDTVQREREFRRDNIYSeLGYKEIYDVTTIAYGGTKPQNVSVLNNQYG 257 Legionella pneu...
Q9CNW8       198 D-----DYICLIPLYPSALTHTFYQKIVqTRYSEKNKNASTKRYKKVSGqEHYCSINDLGIVSLGGSNSQNVSQLNSSQK 272 Pasteurella mul...
Q5NPQ4       183 D-----QYILLQPLFPSALVNYVHQNIQaVRFGESNKEARSAFSKKEASeLVYQEYKKLAVQRLGGTKPQNISQLNSERG 257 Zymomonas mobilis
Q02ML9       185 S-----GYHLLAPLFPTSLVHHVHALLReARFGDAAKAAREARSRQESWpHGFSEYPNLAIQKFGGTKPQNISQLNNERR 259 Pseudomonas aer...
YP_001562242 182 DacadeGYELLAPLFATTLAHAVHAQVQeDRFGESNKAARQARRERKAHdGVFHDYPGLAVQKMGGTKPQNISQLNSERG 261 Delftia acidovo...
YP_996236    189 D-----DYELLAPLFATSLAHRVYADVQeVRFGEANKAARQAWRERKAHdGVLVDYPGLAMQKMGGTKPQNISQLNSERG 263 Verminephrobact...
YP_001555797 202 Q-----HYHLLCPLFSSSLAHELYHHVTsTRFGDEPKAIREARKKGHYHaSLEKIFPATAVQNFGGSKPQNISQLNSERY 276 Shewanella balt...
Q7NX74       267 GSSYLLASLPPLWDnsDlRpLyrlDSVFs-RFGRrkTVRETIRELKQWLAklnpeatppdqakpGNRHVRNRRD-AYLEQ 344 Chromobacterium...
Q1NQR3       276 GRSFLLSCAPPAWQp-QkKpPigaKTIFs-RNHFgaRVYRTIWNARNFLEkqv--------dkpSIMQVRAKRE-AYIDE 344 delta proteobac...
Q0YSR0       280 GQAFLLPSLPPIWHssAvRpPlgvESVF--PKIFagRVKRLTHELKNFLVkvq--------dreSNAEMRQTRV-ELVGK 348 Chlorobium ferr...
Q5WRV8       258 GKAYLLFSAPPMLEqrEiTfP---TKDFfvQSIRyyDCKEILEQLDNIFKiery-------gkiSLDKIRKGRD-RCLSD 326 Legionella pneu...
Q9CNW8       273 GRHYLLPSLPPRCKthKiK-PinlLSNTifNNDLayICQGGLDKLYSVVKaq-----------kNVYTVRDNRS-KALNM 339 Pasteurella mul...
Q5NPQ4       258 GVNYLLASLPPRWKgkRrLlPlncKSALd-VFFKrpDVYGQVDKLIKFLKsn----------ppDNLNTRQYRQ-RFEQK 325 Zymomonas mobilis
Q02ML9       260 GENWLLPSLPPNWQrqNvNaPmrhSSVFehDFGRtpEVSRLTRTLQRFLAkt----------vhNNLAIRQRRA-QLVAQ 328 Pseudomonas aer...
YP_001562242 262 GVNYLLASLPPVWRssDvRlPvhaSSVFdrLFIGrpEVRSTVRKLRAFLAtd----------pePNLQTRERRE-AFMDA 330 Delftia acidovo...
YP_996236    264 GVNYLLASLPPIWKvtErRlPvntDSVFkhLYPQrpDVQKTVRELRRFLEed----------pePNLATRERRA-AYVET 332 Verminephrobact...
YP_001555797 277 GQSFLLNCAPPHYQa-QsKpPltsASIFsrQLRF--KTAGFIREFKAFLAgvt--------aqeNNFKARYQRDyGFVLP 345 Shewanella balt...
Q7NX74       345 IFEELLQFGAAYANQl-PRGWTADSe--cRLPLEEQCWLdprr---------adsDEDFNRHFQFQDWPRQLTESFARWL 412 Chromobacterium...
Q1NQR3       345 LIDHLVHYAAEIQQIqgMRGWSALPe--cRLGRAEQLWLdpkr---------agmDPEFAKERESNDWQGEIADQFARWL 413 delta proteobac...
Q0YSR0       349 IIDELLQYSSEVQGL--PPGWSTKPe--cLLEKAQLFWLdpe-----------rtDDEWQQQREATGWEQQIIYEFANWL 413 Chlorobium ferr...
Q5WRV8       327 MLDMILQKMMVLREAs-KNQFRSQSs---SLPAWQKIWLc---------------EQYIEERGKRDDWLETLCKQIALWI 387 Legionella pneu...
Q9CNW8       340 ILESILDIVSELQKQ--PAGWSKDS----QLEMCEKYWLdpkrv-------hlpdEEAFRAEYEKGEWVAEVERRFALWL 406 Pasteurella mul...
Q5NPQ4       326 LIESLVDFAATIKAEm-PVGWSREDg--cQLPPYERLWLdperslfslrddsdeaDQIFYNEYMKGDWPDAVAQNFGRRL 402 Zymomonas mobilis
Q02ML9       329 ICDEALQYAARLREL--EPGWSATPg--cQLHDAEQLWLdplr---------aqtDETFLQRRLRGDWPAEVGNRFANWL 395 Pseudomonas aer...
YP_001562242 331 LIDEMVSLAGEVQQTl-PAGWSRDVerfgKLVREEQLWLdplrt-------elrdEADFAREWLWMDWPAEVGKRFANWL 402 Delftia acidovo...
YP_996236    333 LVNELLNLAGELQQGl-PAGWTLNDkrfqQLAPVEQLWLdprra-------tlpdEDDFAKEWLWQDWPAAIAKRFGNWL 404 Verminephrobact...
YP_001555797 346 IIDVLLNEAAIIQNMteFAGWATSAe--cQLKTAHGLWLdva-----------npEPRFQQERAKGDWQDIIANDFATWL 412 Shewanella balt...
Q7NX74       413 NGQLG-Gd----rLQLAEAEFHHWRR 433 Chromobacterium violaceum
Q1NQR3       414 NNRIK-Ss----kLSLGDVEHREWQS 434 delta proteobacterium MLMS-1
Q0YSR0       414 NATLQ-Td----yLRFGDDERQEWKK 434 Chlorobium ferrooxidans DSM 13031
Q5WRV8       388 NSAYK-Nsik-hpTMLGEAERRYFKD 411 Legionella pneumophila str. Lens
Q9CNW8       407 NKRLQ-KrfphiaKDFDDVEYHEWRR 431 Pasteurella multocida
Q5NPQ4       403 NAKLK-Hq----dIPVGETEYIHWVR 423 Zymomonas mobilis
Q02ML9       396 NRAVS-Sd----sQILGSPEAAQWSQ 416 Pseudomonas aeruginosa UCBPP-PA14
YP_001562242 403 NSQLF-Gq-----LPVGDAEARVWKK 422 Delftia acidovorans SPH-1
YP_996236    405 NDKLA-Gr-----LLVGDVEAREWQR 424 Verminephrobacter eiseniae EF01-2
YP_001555797 413 LAQLQnKe----rYVLGDIEHQYVKK 434 Shewanella baltica OS195
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