2GRE


Conserved Protein Domain Family
M42_glucanase_like

?
cd05657: M42_glucanase_like 
Click on image for an interactive view with Cn3D
M42 Peptidase, endoglucanase-like subfamily
Peptidase M42 family, glucanase (endo-1,4-beta-glucanase or endoglucanase)-like subfamily. Proteins in this subfamily are co-catalytic metallopeptidases, found in archaea and bacteria. They show similarity to cellulase and endo-1,4-beta-glucanase (endoglucanase) which typically bind two zinc or cobalt atoms. Some of the enzymes exhibit typical aminopeptidase specificity, whereas others are also capable of N-terminal deblocking activity, i.e. hydrolyzing acylated N-terminal residues. Many of these enzymes are assembled either as tetrahedral dodecamers or as octahedral tetracosameric structures, with the active site located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers.
Statistics
?
PSSM-Id: 349907
Aligned: 15 rows
Threshold Bit Score: 341.178
Created: 20-Apr-2007
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1: metal binding site [ion binding site], 6 residue positions
Conserved feature residue pattern:H D E E [ED] HClick to see conserved feature residue pattern help
Evidence:
  • Comment:annotation is based on similarity to other subgroups

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                          #          
2GRE_A      7 ETXELIKELVSIPSPSGNTAKIINFIENYVSewnVETKRNnkGALILTVKGknd-------aqHRLLTAHVDTLGAXVKE 79  Bacillus cereus
EDP65876   29 RILDHLLNLEAIPSPSGYTDSIVRYLCGWLHdrgIDYELTrrGAIRANLKGevs-------spDRAVVGHVDTLGAQVTR 101 alpha proteobacter...
NP_436988  11 YLTSRLKALLDIASPTGFTDEAVRYTARELErlgLEVKLTrrGAIRALRPGaae-------rpARGIVSHLDTLGAQVKA 83  Sinorhizobium meli...
NP_252151  11 YLQRVLLEMLAIPSPTGFTDTIVRYVAEQLDelgVPFEMTrrGTIRATLQGrln-------tpDRAVSAHLDTIGALVRE 83  Pseudomonas aerugi...
EBA39492   15 YIAGQLKTLTSIASPTGYTRAATDYLMETLRdmgFGPERSnkGNVLVELGGeg---------ePLVLASHVDTLGAMVRS 85  Collinsella aerofa...
NP_973038  19 KVMDEIITICNIPSPTGYTCEAADYVLKRLSglgFKPWLTnkGAVVCELDKnaepntgkkgdkALLLSAHIDTLGLFVRH 98  Treponema denticol...
EDM98919    9 QLMKNAQELLGIDSPSGFTQAAAAFLTGFAArlgYETTETnkGNVIVHIPGres-------gkKVALCAHVDTLGLMVRS 81  Bacteroides capill...
NP_970634   5 YAVELSKELLQIHSPGGYTKNAIDRIKKEFDslgIKYTETnkGAIYGTIEGknt-------akHRVVSAHADTLGAMVRQ 77  Treponema denticol...
CAJ69036    7 NTINLMKKYLDIPSPAGYTENAVLEIKKDFEnlgLDTILTkkGALIATLPGedd-------snQITISAHMDTLGAIVKE 79  Clostridium diffic...
NP_294670   8 YTLDVLLRLLATPSPTGFTEAALALVEGELHklsVPSQRTrkGALTWEVPGsg--------agHVTYSGHVDTLGAMVKA 79  Deinococcus radiod...
Feature 1                                                                                     
2GRE_A     80 IkpDGRLSLSXIGGFRWNSVEGEYCEIETssgKTYTGTILxhqTSVHVYKDagea-krdEKNIEVRIDErvfsADEVREL 158 Bacillus cereus
EDP65876  102 LkpNGRLSVRPIGTWAARFAEGARVSVFTe-aGPRRGTILplkASGHVYDDeietqpshWDNLEIRVDDrvssEEDLVAR 180 alpha proteobacter...
NP_436988  84 LkeNGRLELVSIGHWSARFAEGARASIFSg-kGTYRGSILplkASGHTFNEevdtqptgWRHIELRVDAlardRNDLVQL 162 Sinorhizobium meli...
NP_252151  84 IkpNGRLGLAPVGCWSSRFAEGSRVTVFTe-qGVFRGSVLpllASGHAFNTevdnlkisWDNIELRLDAytasRADSESL 162 Pseudomonas aerugi...
EBA39492   86 IkdNGRLRPTTLGGHQWSTADGENCTVYTrdgNVYTGVVLntePSAHVADEpvk---aiEKNMEILLDEnvdsKDDVLEL 162 Collinsella aerofa...
NP_973038  99 IksSGRLRTSLDGGFPYNYVEQSNVTVITregKKYEGTMRltePAVHASREinel-krdDSNMELVLDEivksREDVEKL 177 Treponema denticol...
EDM98919   82 ItaDGQLKITRVGGPILPTLDGEYCAIYTrdgRRYTGTVLslsPAVHVYDDastr-ardEDNMAVRIDEvvksKEDVEAL 160 Bacteroides capill...
NP_970634  78 IkpNGCLKLAAIGGIAFNSIEGENLYIITrtgKVITGTGLpekASVHIFESieke-ernLETFEVRLDAethsKEETLAL 156 Treponema denticol...
CAJ69036   80 IssDGTLKYHKVGGGCWAAIEGENCTVITrkgKKIRGSVVfkyASTHIYGQtkaaternEETMIIRLDEkvftKQDVLDL 159 Clostridium diffic...
NP_294670  80 IkpNGRLLLWPLGGYDWATVEGEDVLVHRqngETVSGTVVnvrQSTHVHGAalrdlrreAAVMEVRLDAvtgsAAETRGL 159 Deinococcus radiod...
Feature 1                                #                                 ##                 
2GRE_A    159 GIEVGDFVSFDPRVQITesGYIKSRHLDDKVSVAILLKLIKRLqdenvtlpyTTHFLISNNEEIGYGGNSNIPeetVEYL 238 Bacillus cereus
EDP65876  181 AFHVGDIVAIDPQPEVTdtGFINARHLDDKAGVAAMMEVLSALtetdaklpvDCHFLFTISEETGSGASAVLHgdvAELL 260 alpha proteobacter...
NP_436988 163 GIDVGDIVAIDPQPELLenGFIVSRHLDDKAGVAIMLAALEAMqrekvdtpvDTHWLFTIGEEVGVGASAAIVpeiASLV 242 Sinorhizobium meli...
NP_252151 163 GISVGDYVAFDPLPEFTesGHISARHLDDKAGVAALLAALKAVkesgqeppiDCHPLFTITEEVGSGAAGALPwdvSEFV 242 Pseudomonas aerugi...
EBA39492  163 GIQTGDIIAMDPRTTVTesGYIKSRFLDDKLSASILLGLARAVadgevslsrKVSLLFTVYEEVGHGGAFVPAd-tREMI 241 Collinsella aerofa...
NP_973038 178 GIMAGDVVAIESLARKAgnGFLKSRHLDDKASCGMFIYLAEQVakgelklkrKTYIMFTNYEEIGHGASAGHPegiSDML 257 Treponema denticol...
EDM98919  161 GIRPGDYVCFDPKTLVTesGFLKSRFIDDKGSAACLLTLMQVLsdkglkpmyDTKFIFSVHEEVGHGGATIPRd-lDELL 239 Bacteroides capill...
NP_970634 157 GINIGDFVAFEPRTIETedGYIKSRHLDDKACIGMLFAACKALkekgekpayTTHFFISNYEEIGHGFYGIPKe-cFEVL 235 Treponema denticol...
CAJ69036  160 GISVGDFVCLDHRFEATesGFIKSRYIDNKSAVAMVLEICRYFkennltpkhTTNFYISNYEEIGHGVSKCLPektKEFV 239 Clostridium diffic...
NP_294670 160 GIGVGDFVSFDARPRLTpaGYVKARHLDNKAAVAVFLTVTRALlqsp--pvkTVAFHVTTYEEVGHGAATGIPphtDELI 237 Deinococcus radiod...
Feature 1       #                                                                             
2GRE_A    239 AVDXGALgdgqasDEYTVSICAKDSSGPYHYALRKHLVELAKTNHIEYKVDIYPyYGSDASAAIRagfDVKHALIGAGID 318 Bacillus cereus
EDP65876  261 AVDNATVapgqnsSEYGVTVAMGDMTGPFDYHLTHGLIDLARRYGIDHKRDVFKhYRCDAASAIEagnDIRTALVAFGLD 340 alpha proteobacter...
NP_436988 243 AIDNGTTapgqnsDEFGVTLAMADQTGPFDYHLSKKLYELCGEHGIRVQKDVFRyYRSDAASAVEaghDVRTALVTFGVD 322 Sinorhizobium meli...
NP_252151 243 GIDIAPVaegqnsNEHSVSVAMQDSGGPYDFHLSRHLLRLGERHDIALRRDLFRyYHSDAQSAIAaghDTRAALLAFGCD 322 Pseudomonas aerugi...
EBA39492  242 SVDMGCVgddlgcTERMVSICAKDSGGPYNYDLVTTLSNIARELELDYAIDVYPhYGSDVEATLSagyDIRHGLIGPGVY 321 Collinsella aerofa...
NP_973038 258 AVDMGVVgsdldtDEYAVSICAKDSSGPYNYEFTSELIKIAKEMELNFAVDVYPfYGSDASAALKagyDYRHALVGTGVA 337 Treponema denticol...
EDM98919  240 IVDMGCVgldltcTEYQVSICAKDSGGPYDYGMTTRLVNLAQQGGVDYAVDIYPhYSSDATVAWRsgaDVRAALIGPGVH 319 Bacteroides capill...
NP_970634 236 ALDIGTVggeqnsDEHAVTIIAKDSRTPYDFGFRHRLENLAIQNKINYRTDVMFrYGSDASMYVLqgfDINFACMGPGVS 315 Treponema denticol...
CAJ69036  240 AIDIAPTgpsqtsSEHGVTIVAKDNLSLYDFNLRNKLVDVAEDNNLDYAVDVFTfYGSDASEAIRwgeDVQIACVGPGTN 319 Clostridium diffic...
NP_294670 238 AVDMAAVgdgqtsSEHHVTLCVADGGGPYDHALGNRLRAAAARAGVELRVDIYPfYSSDGTAAWRaggDYPVALIGPGVD 317 Deinococcus radiod...
Feature 1       #                     
2GRE_A    319 SSHAfERTHESSIAHTEALVYAYV 342 Bacillus cereus
EDP65876  341 ASHGwERVHIDSLTALARLVAVYV 364 alpha proteobacterium BAL199
NP_436988 323 ASHGyERIHLHALMSVAKLAVYHA 346 Sinorhizobium meliloti 1021
NP_252151 323 ATHGyERTHIDSLAALSRLLTAYI 346 Pseudomonas aeruginosa PAO1
EBA39492  322 ASHNyERSHIDGVRNTYELVRAYV 345 Collinsella aerofaciens ATCC 25986
NP_973038 338 ASHGyERIHKQGLENTLLLLTAYI 361 Treponema denticola ATCC 35405
EDM98919  320 ASHGmERTHWEGMKNTMALCLLYL 343 Bacteroides capillosus ATCC 29799
NP_970634 316 ATHHyERTHIDSYKETINLLYAYL 339 Treponema denticola ATCC 35405
CAJ69036  320 NSHHyERTHIEAIENTLKLLINYM 343 Clostridium difficile 630
NP_294670 318 ASHAyERTHTDALDATAALMLAYV 341 Deinococcus radiodurans R1

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap