Conserved Protein Domain Family
SAM_7_link_chp

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TIGR03915: SAM_7_link_chp 
probable DNA metabolism protein
This model represents a conserved hypothetical protein that almost invariably pairs with an uncharacterized radical SAM protein. The pair occurs in about twenty percent of completed prokaryotic genomes. About forty percent of the members of this family occur as fusion proteins, where the C-terminal domain belongs to the uracil-DNA glycosylase family, a DNA repair family (because uracil in DNA is deamidated cytosine). The linkage by gene clustering and correlated species distribution to a radical SAM protein, and by gene fusion to a DNA repair protein family, suggests a role in DNA modification and/or repair.
Statistics
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PSSM-Id: 274851
Aligned: 87 rows
Threshold Bit Score: 203.556
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EAP86773       7 LNYDGTFDGFLTCVFEVYEKKikIFNIQN----I--TVAQD-----SLFAQS--------YAVQTE--EVKANRVWSSLK 65  Croceibacter at...
WP_012446174   1 mepPWSFEAWRALARAGWCAQaePDDVAW----N--GGAQ---------GGL--------LMGQGL--LELPAVVPPP-- 53  Xanthomonas oryzae
WP_011334832   4 LDCDDLFDTWRQQARWLLSHEidPSLVSW----A--SEGVS-----DLFASD--------VSVPEG--Q-------GPFQ 55  Pseudomonas flu...
WP_012206649  10 LDSPDDWPGFRAACRALLAHGadPALVRWrwpdT--QGAQPlgagvDLFSSA--------PQQAMP--ASALAGLAGPGE 77  Delftia acidovo...
WP_011797600  13 LQHPADWQGFRAGARACLHAGmaPEQVAW----QvvGAVED-----DLFGTAdarhaaggAHGAAP--PSGPEGAGGPAG 81  Acidovorax citr...
WP_012171530   6 LECETDFAGWRQAARRLIGGGiaPRDVMW----S--VGGAA-----DLFGAG--------APLPDD--TPAA-------Q 57  Azorhizobium ca...
WP_012521461   6 lasETDLDGWRAAARRLRAAGtpPEAVLW----T--VDGEA-----GLFP-------------ASE--PAPAGNSARPF- 58  Phenylobacteriu...
WP_012314011   4 LDCDERFSTWRDQARTLLGHGidPAQVTW----S--QGPID-----DLLA---------------V--PAPLPDGPGPFR 55  Pseudomonas putida
WP_015918545   7 legrGDLSEWREAARRCLQAGiePKAIDW----QliGDEQG-----LFGADA--------SRSKEGstPSPAERTGETAQ 69  Agrobacterium v...
WP_020011321   6 legrGDFGEWRDAARAALTADirPEMIDWr---L--RDDGA-----GLLEFA-----------------GQPLPAVGSGS 58  Agrobacterium
EAP86773      66 KRLT-PQACHQ--LYCAFLSE-RTGIEDVMLRYIQKSLKSkR-SIATDFSDDDVLKVAQLAKMVNREKHRMEAFIRFRL- 139 Croceibacter at...
WP_012446174  54 -RVS-AD-FMQ--LAASVLCHrDPQRHAVLYRLLWRVACG-EkALLERATDVDVHRLRQWQKAVQRDTHKMKAFVRFRR- 126 Xanthomonas oryzae
WP_011334832  56 ARIP-RALLDT--LEQASRYR-GDQRWSLLYEVLWRV-SH-GdRTAMMAGDKLGSELQRRIKQVQREAHHLHAFVRFIEr 129 Pseudomonas flu...
WP_012206649  78 AGLS-LSDTQMsaLRHACMHR-AAGRFELCHRWLARMQAR-P-ELRLDALDADWRAIEALARPVSREIHKMHAFVRFRT- 152 Delftia acidovo...
WP_011797600  82 TPVHvPRAFVA--LCESACLHrDPARFALLYRALWRM-AH-EaALRHDPLDADIARVQRMAAAVRRDMHKMRAFVRFRP- 156 Acidovorax citr...
WP_012171530  58 FTVP-RGFLRL--AETAFLHR-DRERFGL-LYRLLARLRA-EpGLLSIAMDSDVARVEGMAKSVRRDIHKMRAFVRFRQ- 130 Azorhizobium ca...
WP_012521461  59 -TVP-REFFDL--AGQVVLHR-SDERFALLYRLLWRLQDA-P-DLLRMTTDPDVARARQFARDVDKAAHKMKAFVRFRQ- 130 Phenylobacteriu...
WP_012314011  56 ATVP-AALLSL--LEQASRYR-GEQRWNLLYEVLWRV-AH-GdRTAMLAGDRLGSELHRRIKQVSREAHHLHAFVRFVP- 128 Pseudomonas putida
WP_015918545  70 MSV--PATFLR--LAEAVVCHsDPGRFAL-LYRLLFRLRQ-ErHLLEVKTDADVALAYRMQKSVGRDYHKMTAFLRFKE- 142 Agrobacterium v...
WP_020011321  59 AQVSvPASFVA--LAQAVICHnDPGRFAL-LYRLLWRLRQ-DrALLQFKSDPDVSEVRLLEKSVRRDCHKMTAFVRFKE- 133 Agrobacterium
EAP86773     140 ---T-----K-------N----G----V-------YFANCDPDFNVLPLIRKHFLKRYADQQWIIYDLKRDYGLYYNLHK 189 Croceibacter at...
WP_012446174 127 ---L-----P-------G----Ee--eD-------FVAWFEPEHWIVDRVAPFFARRFAGMRWAILTPYR--SVRWDGEA 176 Xanthomonas oryzae
WP_011334832 130 paeL-----P-------G----P----Q-------YVAWHEPAHDILHSASEHFIGRMGRHRWLIATPRD--GVYYDGEQ 180 Pseudomonas flu...
WP_012206649 153 ---T-----Q-------RqnqpD----L-------HIAWFEPEHHIVRAAAHFFCKRFANMHWAILTPQC--SAHWDGHA 204 Delftia acidovo...
WP_011797600 157 ---V-----D-------D----GgagpL-------HVAWFEPDHFIVRANAAFFVQRFTQMRWALLTPEC--SLHWDGTA 208 Acidovorax citr...
WP_012171530 131 ---V-----Eva----gA----E----W-------FVAWFEPEHHILEANAPFFQRRFAGMKWSILTP--EASAHWDGET 181 Azorhizobium ca...
WP_012521461 131 ---V-----E-------D----Eeg-eA-------YVAWFEPAHRVTELVAPFFARRFANMRFSILTPDV--CAHWDLKA 181 Phenylobacteriu...
WP_012314011 129 ---L-----P-------P----A----LaeqlqldLVAYHEPAHDILPSASAHFADRLGRQRWLIATPQD--GIRFDGQG 183 Pseudomonas putida
WP_015918545 143 ---V-----PlpvgvavR----R----R-------FLAWFEPDHFIVARVAPFFQRRFNDMDWIILTPRG--SASWDGQT 197 Agrobacterium v...
WP_020011321 134 ---VplpqgQ-------G----G----Rr-----rFIAWFEPDHFIVERTAAFFQRRFTDMDWLIATPKG--SAQWDGNA 188 Agrobacterium
EAP86773     190 VDIVNFQFDKN-FDPTktssdmfdED-ELVFQTLWRDYFKSTNIKSRKNMRLHIQHVPKRYWKYLSEK 255 Croceibacter atlanticus HTC...
WP_012446174 177 LSFGAGAGRTQ-V-----------PA-DDAQEALWRTYYAHIFNPARLNPTMMRQEMPQKYWKNLPEA 231 Xanthomonas oryzae
WP_011334832 181 LIHERQCPLEW-QQLA--------QNvDDPHGDLWLTYYSHIFNPARLNEKVMQGHLPTRFWKNLPEg 239 Pseudomonas fluorescens
WP_012206649 205 LRLTPGARRSD-A-----------PP-ADAGEALWLTYYASTFNPARLKEQAMLREMPRRYWHNLPET 259 Delftia acidovorans
WP_011797600 209 LKTGPGATRAD-A-----------PP-PDAGEALWLTYYRHTFNPARLKLDMMRREMPVRYWKNLPEA 263 Acidovorax citrulli
WP_012171530 182 LTFGPGGTRAE-A-----------PA-DDAMETLWRDYYASIFNPARLKISAMKSEMPVKYWRNLPEA 236 Azorhizobium caulinodans
WP_012521461 182 LAFTPGADAAD-A-----------PS-SDALEDYWRTYYASIFNPARLKVGAMTKEMPRRYWRNLPEA 236 Phenylobacterium zucineum
WP_012314011 184 FDYQRHCPDAWrQWAR--------NA-DDPGAELWRTYYRHTFNPARLNPDALRLHMPGRFWRHLPEg 242 Pseudomonas putida
WP_015918545 198 L-LTSTEPAVK-PDIR--------DE-TD---DLWRIYYASIFNPARLKVKMMMTEMPKKYWKNLPEA 251 Agrobacterium vitis
WP_020011321 189 LR-TSREAAAK-PDLT--------DE-TDE---LWRTYYANIFNPARLKIKAMTAEMPKKYWKNLPEA 242 Agrobacterium
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