Conserved Protein Domain Family
RgfB-like

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cd09079: RgfB-like 
Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins
This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.
Statistics
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PSSM-Id: 197313
Aligned: 28 rows
Threshold Bit Score: 220.598
Created: 27-Jul-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative catalytic site [active site]
Evidence:
  • Comment:based on other EEP superfamily members with structure; highly conserved in the EEP superfamily

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                                            #              
AAM22579       4 CLTLNTHSWMEvn--aLKKLFDLAEHIFRe---------------------------KYDIICLQEVNQsissplakss- 53  Streptococcus a...
EER41685      15 VLTLNCWGLKYi---sEYRRERLIEIGKRial----------------------senTPHIVGLQECWSred-------- 61  Ajellomyces cap...
XP_002614623   9 LLTLNTWGLKYv---sKRRKERLRAIAERls------------------------rgEYDVVALQEIWVeed-------- 53  Clavispora lusi...
XP_001729001  69 VLTLNCWGLRFf---sKLRKERLAAISDRla------------------------dtHYDVIALQEIWVriag------- 114 Malassezia glob...
XP_001646966  24 FLTFNTWGLKWvskhrKKRLEAIAKTLAGenvavplegseillpedqaaggpqtmidNYDVVALQEVWCked-------- 95  Vanderwaltozyma...
XP_002172473  11 VLSFNCWGLRFv---sKYRTERLHAIGVKls------------------------ecDYDIVLLQEVWSindy------- 56  Schizosaccharom...
CBL24833       3 LMTLNTHSLVEss--yEEKKEKFIETLIAe---------------------------QPDVVALQEVNQtasagiipdvm 53  Ruminococcus to...
ZP_03682563    3 LMTLNTHSLSEsd--eKNKLQTIANFILNh---------------------------DVDVICLQEVNQsmtaksvst-- 51  Catenibacterium...
CBL36555       3 LLTLNTHSLEEkd--yEKKLKIFTEEILKe---------------------------KPDVIALQEVNQpldgeeadgev 53  butyrate-produc...
ZP_04670694    3 LMTLNTHSLEEen--yEAKLHAFAEGVCRa---------------------------EPDIIALQEVNQtqiaapvdkkd 53  Clostridiales b...
Feature 1                                                                                        
AAM22579      54 -----------------------pnyhpiegtpALHQDNfalQLVHYLNLQGl-hYHWTWAYNHIGYSKYHEGVAILSLK 109 Streptococcus a...
EER41685      62 -------------------------------yhNIRRETreiLPYGKFYFSGi-fGGGLAILSKWPIEESTMHAYPLNGR 109 Ajellomyces cap...
XP_002614623  54 -------------------------------waYLEEACrsvYPYRRRFSSGiltGPGLALLSKLPVERTFLYRFPINGR 102 Clavispora lusi...
XP_001729001 115 ------------------------------laaHARSFVatdIPYGKFFLTGa-fGSGLAIMTRYPIVSMETHMFRLTGT 163 Malassezia glob...
XP_001646966  96 -------------------------------weYILSKCshiFPYTRIFYSGiltGPGLAILSKIPIESTFLYRFPINGR 144 Vanderwaltozyma...
XP_002172473  57 -----------------------------hsiqNSTREN---LPYSRFYHSAa-mGAGLAVLSRYPIVETTMNKYPLNGR 103 Schizosaccharom...
CBL24833      54 l---------------------agykrcmdfglPVREDNhakEVVEALREKDv-yYYWTWLSAKIGYGKYDEGMALLSKK 111 Ruminococcus to...
ZP_03682563   52 -------------------------dssyvgrdIIKEDN---YALGLSRLLGd-qYNWNYIPVKVGYDKFDEGVAIFSKY 102 Catenibacterium...
CBL36555      54 lkks---------------gfipcpseppscavPVRLGNhglRAAQLLRRSGf-lVFWTWTSAKVGYGKYDEGMALMSRR 117 butyrate-produc...
ZP_04670694   54 lelygyvpcapctpyaphaqcasvsqcsvhpspIPRTDNhayRAARICAEHGr-pYHWTWIGAKTGYGKYDEGLAILSRI 132 Clostridiales b...
Feature 1                                                              #                         
AAM22579     110 Plkp--ndiLVSAVDDEtdy----------htRRALVAETtln--dkvVTVVSLHLSWf------------eKGFAEEWK 163 Streptococcus a...
EER41685     110 PsaifrgdwYVGKGVACar------------iRIGPAAADi-------VDVFCTHLHApyereprdsyichrTAQAWEIA 170 Ajellomyces cap...
XP_002614623 103 PsaffrgdwFVGKSVAItllhprtgaasadgaAKTPAAAP--------LAVLNSHMHApyaqtgdaayaahrACQAWDLA 174 Clavispora lusi...
XP_001729001 164 Pi-------YVQEGDWIa--------------GKACGRITmahpqlglVDVYTSHFTAhggqsgpeiqrvyrTTEAFELA 222 Malassezia glob...
XP_001646966 145 PsaffrgdwYVGKSISVt-------------lLKPLTPDTs------pLAILNSHMHApyapsgdanyhcyrACQAWDFS 205 Vanderwaltozyma...
XP_002172473 104 PqafwrgdwYVGKGVATa-------------sLQHPSGKI--------ISVFDTHLHApygkged-tylchrMAQAWYIS 161 Schizosaccharom...
CBL24833     112 Pimrv-kqfLISQTDDYdnw----------ktRKILGMQTeg----sdDIFFTVHMGWwnd---------eeEPLKKQWE 167 Ruminococcus to...
ZP_03682563  103 Pivns-entLLTQTNDYsfw----------kkRNSLGVELvke--nthFWVYTAHLGWwkd---------eeEPFINQWH 160 Catenibacterium...
CBL36555     118 Piaev-sqlFLTDGRDYnnw----------ktRKALAITLnigkgeepVSFVTAHMGWwkd---------eeEPFSRQWE 177 butyrate-produc...
ZP_04670694  133 Piaet-kqfYITASQDYanw----------ktRKILGIGIaae--hgmEYFYTVHMGWwkd---------edEPFEGQWE 190 Clostridiales b...
Feature 1                               # #                                                      
AAM22579     164 RLETTlle------vetPLLLMGDFNnptgnqgy---------------------------------------------- 191 Streptococcus a...
EER41685     171 KLMKAaae------kghLVVGLGDFNmlpqsfahrlitshapvkdvwghlhpdssigaaidsaemsrkkpvpsadfnise 244 Ajellomyces cap...
XP_002614623 175 QLVRTlkr------agyAVVQVGDLNskpgslphklftaea-------------------------------glmdswea 217 Clavispora lusi...
XP_001729001 223 QKCTAsaq------agrHVLCMGDLNslpsslcmallqs------------------------------------vgglq 260 Malassezia glob...
XP_001646966 206 KMANLykk------agyAVVVVGDLNskpgslqhklltvet-------------------------------gltdsweq 248 Vanderwaltozyma...
XP_002172473 162 KLIRAavq------rghIVLAAGDFNfqpltephniitsygl-----------------------------vsdswlsvh 206 Schizosaccharom...
CBL24833     168 KMEKLtksle---kkdrTIWLMGDFNsldnvkqe---------------------------------------------- 198 Ruminococcus to...
ZP_03682563  161 KLKTIatk-------evPVYLAGDFNapdiipnq---------------------------------------------- 187 Catenibacterium...
CBL36555     178 RLDAFassl----rrraDVWLMGDFNtqdsvrge---------------------------------------------- 207 butyrate-produc...
ZP_04670694  191 RIRRElgdgacletypgPVWLMGDFNspahvrge---------------------------------------------- 224 Clostridiales b...
Feature 1                                                          #                             
AAM22579     192 elvlnspLALKDSHQIanHVFGDHTIMADIDGWEgn--------kkALKVDHIFTSedl-----------siSSSQLVFE 252 Streptococcus a...
EER41685     245 ngatcdsILNTWRWSKsqQKRLKREGPMPVDGQRpd--------plAKRLDYIFVGdgsfsnfs-slrkwdiESARVCML 315 Ajellomyces cap...
XP_002614623 218 vhgvvppDELAALPAPeqIVRGGVTCDSRLNTWRsmra-----pweACRLDYALVDahr----------vrpVSAAVRFT 282 Clavispora lusi...
XP_001729001 261 dalahvhNGDSGADITcdSPKNTWSKNKKIDQYAqq--------hgGKCLDYVLYRgpanrm-----srlsySSHEVTFT 327 Malassezia glob...
XP_001646966 249 lkgkqdlSILTRVSPIeqLKIGCTTCDSTLNTWRqkcq-----ptdAKRLDYALIDatr----------lktVNAGVRFT 313 Vanderwaltozyma...
XP_002172473 207 pdqyknaPSRFTLSDQelIDILGVTCDSHLNTWRanvsdkdmddyvAKRLDYVFHSpnn----------tdaVSSKVVFT 276 Schizosaccharom...
CBL24833     199 gyeliceSGWKDSYCLaeQKDSGVTVEEEIDGWRdgegg--gavkdAKRLDYIFCNtqk-----------kvKSSKVVCN 265 Ruminococcus to...
ZP_03682563  188 syttikeDGWFDTRDLadDVQGRFTAQGKIDGWDea--------vdGMRIDYIWCNkke-----------hvKSHHVIFD 248 Catenibacterium...
CBL36555     208 gydritaSGWKDAYRAagKRDGGITIPGAIDGWRedg------evpGMRIDYIWYGrkhdsgdrksrgdvliEEVRTVFN 281 butyrate-produc...
ZP_04670694  225 grdlirgFGWLDSYELagSKDSGITVGHAIDGWReqg------dvsGMRIDYIWTSrkv-----------pvRSSRVIFN 287 Clostridiales b...
Feature 1                    ##       
AAM22579     253 Ggea----pvVSDHYGLEITL 269 Streptococcus agalactiae
EER41685     316 Erhph-lhcsLSDHFGVEATI 335 Ajellomyces capsulatus H143
XP_002614623 283 EplppplscsCSDHFGYSFEF 303 Clavispora lusitaniae ATCC 42720
XP_001729001 328 Dlids-lqvsYSDHFGLEVVF 347 Malassezia globosa CBS 7966
XP_001646966 314 Enipd--igsFSDHFAYTCTL 332 Vanderwaltozyma polyspora DSM 70294
XP_002172473 277 Ehvpk-ldcsYSDHFAIEVVL 296 Schizosaccharomyces japonicus yFS275
CBL24833     266 Gkny----pvVSDHYGVIIEV 282 Ruminococcus torques L2-14
ZP_03682563  249 Gthe----dvVSDHFGLFMED 265 Catenibacterium mitsuokai DSM 15897
CBL36555     282 Gsdc----pvVSDHFGVLAEC 298 butyrate-producing bacterium SM4/1
ZP_04670694  288 Gsye----piVSDHYGIIVEY 304 Clostridiales bacterium 1_7_47_FAA

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