3JS6


Conserved Protein Domain Family
ASKHA_NBD_ParM_Psk41-like

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cd24021: ASKHA_NBD_ParM_Psk41-like 
nucleotide-binding domain (NBD) of Staphylococcus aureus pSK41 actin-like ParM protein and similar proteins from the ParM domain family
Type II plasmid partition systems utilize ParM NTPases in coordination with a centromere-binding protein called ParR to mediate accurate DNA segregation, a process critical for plasmid retention. The family corresponds to a group of uncharacterized proteins similar to Staphylococcus aureus pSK41 actin-like ParM protein, which is functionally homologous to R1 ParM, a known actin homologue, suggesting that it may also form filaments to drive partition. However, pSK41 ParM shows the strongest structural homology to the archaeal actin-like protein Thermoplasma acidophilum Ta0583, but not R1 ParM.
Statistics
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PSSM-Id: 466871
Aligned: 59 rows
Threshold Bit Score: 171.702
Created: 20-Jan-2023
Updated: 27-Apr-2023
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleotide binding site [chemical binding site]
Evidence:
  • Comment:Based on the structural evidence that other ParM family members bind MgADP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           # #### #                                                                     
3JS6_A         7 XALDFGNGFVKGKIn------DEKFVIPSRIGRKtnennqlkgfvdnkldvsefiingnndEVLLFGNDLDkttntgk-- 78  Staphylococcus ...
WP_098517559   7 ISIDCGNLSVKSKSd------LGELHYPNTIREEgyfesqpif----------gnltqskdVGVTFEGEKLvvgetders 70  Bacillus cereus...
WP_098299329   6 VAVDLGNLNVKSFSs------GKEEIFANGIRKFkrgedtdlfgrkv-evdtytisdetgeDTYVIGDFHKgnsymy--- 75  Bacillus anthracis
QDZ76630      14 YTLDLGNGFAKRKStn----dGLVEVDSSVIAQKpagynssnl----------dtyslnktDLYYLGRDVIktkikpqr- 78  Bacillus cereus
WP_086403916   9 YSIDLGNGYTKRIVn------GECIVEPSVIADVesyfsddvd---------vttiqlsegEAYFTGDDVGilglkpis- 72  Bacillus thurin...
WP_044741830   8 YSIDAGNGYTKRCFn------GQVLVESSVIGERtdyynrtqy----------tslsldneTLYYVGNDAIesgvdlrp- 70  Anoxybacillus s...
WP_155062367   7 IALDLANGFIKVAN-------KETLCYENKLRRIrhnefsv--------------ltqfneTIYTFEGNQYvldpvgei- 64  Turicibacter sa...
SLL37382       7 YAIDLGNGFTKRTKg------NDVIVEPSVIEYIedfftskes---------gntfkyeksDSYRIGNDADpsraesa-- 69  Mycobacteroides...
QDZ76641       7 YAIDLGNGFTKRASkkkkdleAHVVTELSVLAPVddyyneasf---------tqielintgIPYYIGEEARqsklplir- 76  Bacillus cereus
CUB15758       5 YAIDVGIGFTKRAYrq---dvDSEVTIKSEASTLapvpnhaesed------ltkvsfieleFAYYMGNEAHqsdasflp- 74  Bacillus cereus
Feature 1                                                                                        
3JS6_A        79 --dtastndRYDIKSFKDLVECSIGLLArevpeEVVNVVIATGXPSnei----gtdKQAKFEKLLNKSRLIEid----gi 148 Staphylococcus ...
WP_098517559  71 rfsldvnisRYKTSDFRKMFLMAVFKHIr---aHGDEVRVVTGIPGrqyrnlemreEAIQDLKSLEGQYEMN-------- 139 Bacillus cereus...
WP_098299329  76 ----smnpdRYTHPDFKRLMLIAVSKHVk---kNKQKVTLVTGLPSnhy----eleEPHTVLKALCGTYKVN-------- 136 Bacillus anthracis
QDZ76630      79 -aqtvdkadRYFSERYELMLYAFIAKDFpt-akEINIPVFGLMLPNehy-----alCEEKLKQKYTGSKVITvs----gv 147 Bacillus cereus
WP_086403916  73 -algehdmdRYETPEFKKMIFGFLAKDFk---qDVTIERLVTGLPVqhf-----kaKGKIVEELLKGRTVVKvn----dk 139 Bacillus thurin...
WP_044741830  71 -algdddemRYRSKEFDQLVYGIMGKDFq---qSTEIPLLVTGLPVnhy-----rgQAGYLMKKFKGSKIVYvn----ne 137 Anoxybacillus s...
WP_155062367  65 -tsggrnnsRYGSDQYLLECLIAISKVT-----DKVDISLTIGLPCkdhg---ndtIKKNIVDKLVGSHILKikkndsev 135 Turicibacter sa...
SLL37382      70 --lgeedqeRYFTNEFSELLYGFIAKDFk---eDVTIPLVVTGLPVnhf-----neVAQRLVDEIKGKKVIRvs----nn 135 Mycobacteroides...
QDZ76641      77 -algenkakRYEDPAFKKQLFGFIAKDFk---kSVTIPLLITGLPVshf-----gnQREVLEKIVTEETVVKvn----ge 143 Bacillus cereus
CUB15758      75 -pfdeeienYYESEQFKQQIFGCIAKDYk---eNVVLPLVVTGLPVtcf-----gsQHERLQRALKKETSVQid----gk 141 Bacillus cereus
Feature 1                     #                               ####                               
3JS6_A       149 AKTINVKGVKIVAQPXGTLLDLNXENgkvfk----afteGKYSVLDFGSGTTIIDTYQNXKRveEESFVINKGt----ID 220 Staphylococcus ...
WP_098517559 140 GIAFEIVEIIIELQPIATTKYLAFHEngepkqgaqefanSKILVVDLGMGSSDVTIVENGMM--TDVFELQYSm----YN 213 Bacillus cereus...
WP_098299329 137 NLEFTIEEVIIEQQALATAIYLGADLkgnikkdsevflnAEVLSINIGMGTTEVAVIYQGKI--DNYFSLSSKan--mHS 212 Bacillus anthracis
QDZ76630     148 DVKINVEEVLVLPQPLGSYMYALSQKkit--------kdEEVLVCDGGAGTFDPAVVINNFV--TDDNYSNEGv----DN 213 Bacillus cereus
WP_086403916 140 DIIIDIKNVSIIPQPIGTYLHLVAKKavt-------pnkDLTLIVDCGHGTLDVTELKGKTI--VKRAGNNEGakeayIN 210 Bacillus thurin...
WP_044741830 138 EIIIHIKDVHVLPQPLGTYMYLVATErie--------pnAKVIVIDGGYGTLDVTELKGQNI--TKRAGENIGv----KV 203 Anoxybacillus s...
WP_155062367 136 ARVLEIKDVTILCEPVGTLLDLIVDEnlhiv---peleeSKFLIVDIGHGTMDIIETNGLHI--TNKDHANIGg----MT 206 Turicibacter sa...
SLL37382     136 DTYAEIIDCRIIPQPLGTYMYLVNKGvid-------peeDSVLIVDGGHGTLDITEINDFVI--SKKAGAELGv----KE 202 Mycobacteroides...
QDZ76641     144 LITIKVKKCLVIPQPVGTQYYLVKKEiik--------kdDRILIIDGGFGTLDVTDMSGNSV--IGRLGTELGcekafLN 213 Bacillus cereus
CUB15758     142 FIHITVENALILQQPVALHAYFLKEGiiq--------erDRILIIDGGFRTLEMTDMKQNVI--LNHYETELGc----SK 207 Bacillus cereus
Feature 1                                                                                        
3JS6_A       221 FYKRIASHvskksegasitprmie----------------kgleykqcklnqktviDFKDEFYKEQDSLIEEVXSNFEit 284 Staphylococcus ...
WP_098517559 214 VYDEIISEmqnmkidgkasilasenltsqriekqiresmiqnenraiyiasnkeafDITEIVHSKFYWGANAFLQNLRan 293 Bacillus cereus...
WP_098299329 213 AYDTIIQKiretkdenekvlvpstleirkqdv-eeqirkqngakkvfyeasngakiEITNYIDESYKETTDQIFKELKdn 291 Bacillus anthracis
QDZ76630     214 AYIKIRKRlidlygelpyfktlsnipl----------ilqhgvlkdgeahsvaedkEIVKILDQHLESIFEYLLENQYn- 282 Bacillus cereus
WP_086403916 211 IYNTLVEEygslkeltisniqni-------------------lldgllvsgsrinvRAKSEVQKILKKHFNSIFTFLQdn 271 Bacillus thurin...
WP_044741830 204 AYEEVLTYlidefgsrgtngltlsqm-------------pyilskgfqtdgqviniAAMPEVQEILNKHFDKNFTFVRdr 270 Anoxybacillus s...
WP_155062367 207 LVQDYLERinakysdtgkvfkesd----------------vtiipknkinryneewDFSQELTNSKKHIANEITSIISqk 270 Turicibacter sa...
SLL37382     203 AHLQIFDFlnnkysgskhlkianmhni-----------lekgllyngskidvknlqEVKKIINRHFDKQSKFVKDSGFn- 270 Mycobacteroides...
QDZ76641     214 MEQLIRDHigetpelsvsnmhyilq---------------ngykyngttynlytdkDLSAKVDAELQQHFQTVLREVAqk 278 Bacillus cereus
CUB15758     208 PLKNIKNIlqnhagesnqlhindmp--------------kilekgygdreenhetsQVDILIQKELNAHFQDVMSVLQeq 273 Bacillus cereus
Feature 1                     ### ##                                        
3JS6_A       285 vgniNSIDRIIVTGGGANIHFDSLSHyy-------sDVFEKADDsq-fSNVRGYEKLGE 335 Staphylococcus aureus
WP_098517559 294 kinfESFANVVLTGGGTHTLLYYLKHslvdyqnnprVKFRMPDNvi-mANARGYYIVAC 351 Bacillus cereus group
WP_098299329 292 nlafENYSAVVLAGGGVVNLIGYIKQeliaykdnnsVRFTLPDSle-fSVARGYYVKGM 349 Bacillus anthracis
QDZ76630     283 ---iTSYGKVLWTGGLASLHNDRLSAkp-------nKNFVILDKdgqeANVLGLWGMVK 331 Bacillus cereus
WP_086403916 272 kfdlRSYDKVVFTGGIVHLYHDYFGEra-------eANFLVVEDgq-tANARGYHEYGK 322 Bacillus thuringiensis
WP_044741830 271 gfdlSGSQYVIWTGGMAELHADRIAAke-------rKNFIILEDgq-vANVKGYDYYAK 321 Anoxybacillus sp. B7M1
WP_155062367 271 gyayENYDLVVFTGGCCLQINDYLAVp---------SNGVIHENcq-tANVNGYKKYAH 319 Turicibacter sanguinis
SLL37382     271 ---vSDYTKVIYTGGSAELHREVIEEkq-------kKNFYVVENaq-eANVLGYLEYGK 318 Mycobacteroides abscessus subsp. abs...
QDZ76641     279 f-nfAVYDKIIWTGGMASLHAKRIAMkqe-----qfPTFEALQNgq-eANLLGYYYLGC 330 Bacillus cereus
CUB15758     274 f-klDQYDTIIWTGGIVDIHKKRIEKmqg-----eiSSFRMVDAsk-eAALHGYYMIGS 325 Bacillus cereus

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