Conserved Protein Domain Family
T6SS_PAAR_dom

?
NF033420: T6SS_PAAR_dom 
type VI secretion system PAAR protein
The PAAR domain is widespread, but this model represents a narrow clade that may occur in type VI secretion systems (T6SS), either free-standing or fused to a long extension. Effector domains of T6SS may be separate proteins, or may be fused to on of the tube or spike proteins: VgrG (spike), Hcp (tube), or this PAAR family (spike tip). Members of this family that have long extensions are likely to be T6SS effectors.
Statistics
?
PSSM-Id: 411112
Aligned: 42 rows
Threshold Bit Score: 108.521
Created: 11-Oct-2024
Updated: 3-Dec-2024
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
ZP_20844203        1 MPTAARLSDKGTQHDGYYETVIITGSPTASIDGLPAARQGDPLTPHSKPDHPPHPRKIAGGSSTVFIDGLPAARTGDAVD 80 
1_ncbifamImport    2 SRQVMLVGDKDTGHGSCPPTAITSGSPTVQINGRAVARQGDPLAPHRKPKGSTHGRHIASGEPTCLVDGRPIALTGHPVN 81 
ZP_08637367        2 SKKIVVVGDIGTDHDGFPPTPVTSGSPDVLVDGKPVARVGDPLEPHAKPKHPPHPRTIASGSSTVFINGRPAALTGSSID 81 
19_ncbifamImport   2 SKAIVLLGDLGMDHQGFPPTPVIAGSPDVLVDGKPVARVGDPLQPHSKPKHPPHPRAIAAGSGTVMINGKPAAVTGSAVS 81 
ZP_01895689        2 GKKLVLLGDIGTDHQGFPPTPVITGSATVLIDGKPVARLGDQLAMHSKPKHPPHPRAIAAGSPTVMIEGKPAALTGDAVS 81 
17_ncbifamImport   2 GRKFVLLGDLGTDHEGFPPTPVTAGSPTVMIDGKPVARQGDPLAPHDKPDHGPHPRAIAGGSGSILVDGKPVALTGDAVD 81 
ZP_10776855        2 GRKLVLVGDIGTDHDGFPPTPVTAGSPTVIIDGKPAARLGDPLAPHDKPKHPAHPRSIAEGSGTILIDGKPAALTGHAVD 81 
ZP_09188325        2 GQKFVLVGDIGTDHDGFPPTPVTAGSGTVMMDGKPVARVGDPLAPHDKPKHPPHPRAIAQGSNSILIDGKPAALTGHSVD 81 
ZP_08636539        2 SQKFVLVGDIGTDHDGFPPTPVTGGSSTVLMDGKPMARVGDPLAPHAKPKHPPHPRAIAEGSGTIFIDGKPAALTGHAVD 81 
5_ncbifamImport    2 CPSIALLGDIGTDHDGFPPTPVIAASPDVFLDGKPVARQGDQLAPHDKPNNPPHPRSIAGGVGSVLVNGKPIAVTDVAVD 81 
ZP_20844203       81 CGGVVI-GGGT-VNIG 94 
1_ncbifamImport   82 CGGSLVaGAGQgVTVG 97 
ZP_08637367       82 CGGVTI-GSGS-VIIG 95 
19_ncbifamImport  82 CGGVTV-GSGT-VIIG 95 
ZP_01895689       82 CGGVVI-GSST-AVGG 95 
17_ncbifamImport  82 CGGVVI-GSSS-GEGS 95 
ZP_10776855       82 CGGVVI-GSAS-GEGS 95 
ZP_09188325       82 CGGVVI-GSGS-GEGS 95 
ZP_08636539       82 CGGVVI-GSGS-GEGG 95 
5_ncbifamImport   82 CGGVVI-GSGS-GQAG 95 
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap