Conserved Protein Domain Family
HTH_48

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pfam17906: HTH_48 
HTH domain in Mos1 transposase
The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats.
Statistics
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PSSM-Id: 465558
Aligned: 75 rows
Threshold Bit Score: 46.741
Created: 26-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EGT43930      76 KYALRVCILYEslkYQKDKSSvpvFEVFVKFCKVIlVEDVLKYPEFEFWFYRFINGE 132
XP_003097357   9 RMHIRHVILFL---FLSGLKS---PDIQKKLTDIY-QAHAPTAPTIRLWIERFEAND 58 
5_pfamImport   1 RNHLRHVILFL---FLFNLKV---PEFHLLLVQVY-KAEALHENTIRFWFRKFENRD 50 
XP_003096139  11 RLHIRHVILFL---FLSNSKI---TEIEERMVEVY-KDNAPQRQAISRWVYRFKNND 60 
KXN70198       4 KRNIKSAILEL---FNKGKSE---TEAYKELSKTH-SSYKISEKAIRNWYEKFMSED 53 
EGI69270       8 KRHLRELLIHF---FNLKKSA---AEAHRLLVEAY-DEAALSERSCREWFQKFKNGE 57 
EFN84002       8 RRNLREALPFR---FHLKKSS---AESLRLLSQAY-GDYAPPISTCEYWFSRFKSED 57 
EFN80044       1 KHHLREVLHYV---I-AKRNA---TETYRLLVEMY-GNHVPPNTTCKEWFRRFQNND 49 
EGI67232       8 NYDLRTALVFC---YHLKKTA---AESHRMLVEAYmLVNMLLVKQCFEWFKKFKSGD 58 
EYB82864       5 KKVYRANLLLQ---YRCGSTA---HETHRFLLDSM-GDRAPSRATCFIWYRRFRNGE 54 
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