1IN0


Conserved Protein Domain Family
YajQ_like

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cd11740: YajQ_like 
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Proteins similar to Escherichia coli YajQ
In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.
Statistics
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PSSM-Id: 213038
Aligned: 506 rows
Threshold Bit Score: 176.781
Created: 22-Dec-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1IN0_A     2 PSFDIVSEITLHEVRNAVENANRVLSTRYDFRgVEAVIELNEknETIKITTeSDFQLEQLIEILIGSCIKRGieHSSLDI 81  Haemophilus influenzae
EEA90196   5 SSFDVVSEVNMQEVDNAFQQAARELSQRYDLKdSGATIELSKsdKLFTLHApADFVARQVIDILSSKLIKRGvdVKTVSW 84  Collinsella stercor...
EBA38779   5 SSFDVVSEVNMQEVDNAFQQTTREISQRYDLKdSGATIELSKgdKLFTINApADFVSKQIVDVLSSKLIKRGidLKAVSW 84  Collinsella aerofac...
EGX67595   5 SSFDVVSQVDMQEVDNAYQQTARELTQRYDLKdSGATIDLSKtdKTFTISApADFVSRQIIDVLNSKLIKRGvdIKSVKW 84  Collinsella tanakae...
ACV51213   5 SSFDVVSEVDMMEVDNAFQQAARELTQRYDLKdSGATLELSKkeGKFTIEApADFVASQVRDVLGSKLVKRGidLTAIRW 84  Atopobium parvulum ...
EHF01853   5 ASFDIVSTVDLQEADNAYQQAARELTQRYDLRqTGATIEFSKkeGVFTISApSEFVASQVIDVMGSKLARRQidLAALRW 84  Olsenella sp. oral ...
ADK68074   5 SSFDIVSTVDLQEVDNAYQQAARELTQRYDLKqTGATIEFSKkdARFTIGApSEFVASQVADVLNAKLAKRRidLGALDW 84  Olsenella uli DSM 7084
EFL43756   5 SSFDVVSEVNMQEADNAYQQAQRELAQRYDLKqTGATISFDKqlASYTIAApSEFVAGQVIDVLRAKLSKRAidLNALSI 84  Atopobium vaginae P...
EGF23764   5 ASFDIVSEVNMQEVDNAFQQCARELTQRYDLKqTGASIEFSKqdALFTIEApSEFVASQVIDVLRTKLAKRSidLSALKV 84  Atopobium vaginae D...
AEB07093   5 SSFDIVSQIDMQEVDNAYQQTTREIAQRYDLKdSGSTVEFSKqsATVTVSApADFVARQIIDVLMAKFVKRSldPRAMRW 84  Coriobacterium glom...
1IN0_A    82 PAESEHHgkLYSKEIKLKQGIETEMAKKITKLVKDSKIKVQTQIQGEQVRVTGksRDDLQAVIQLVKSAELgQPFQFNNF 161 Haemophilus influenzae
EEA90196  85 DDPQAASggAVRLTGRIVEGIDQATAKKINKDIKDQKLKVKVTIEADKLRVSSasKDALQQVIAFLREQDYgQPLQFTNY 164 Collinsella stercor...
EBA38779  85 DAPQAASggTVRVLGHIVEGIDQATAKKINKDIKDQKLKVKVTIEADKLRVSSasKDALQTVIQFLRDQDYgQPLQFTNY 164 Collinsella aerofac...
EGX67595  85 DAPQAASggTVRVIGRIIEGIDQPTAKKINKDVKDIKLKVKVTIEADKLRVSSasKDALQQVIGFLRDQDYgQPLQFTNY 164 Collinsella tanakae...
ACV51213  85 GDPIPAAgsTVRQIGSIVSGIDQETAKKIAKDIRDMKVKAKATVEGDKLRVSSasRDVLQSVIASLKEKDYgQPLQFNNY 164 Atopobium parvulum ...
EHF01853  85 DKPEPAAgsSVRQRGHLVQGIDQDTAKRIAKDIRDLKLKCKPTVEGDKLRVSSasRDVLQEVISHLRDGDYgQPLQFTNY 164 Olsenella sp. oral ...
ADK68074  85 ERPQPAAgaSVRQGAHVVQGIDQDTAKRIAKDIRDLKLKCKATVEGDKLRVSSasRDTLQQVISMLRERDYgQPLQYVNY 164 Olsenella uli DSM 7084
EFL43756  85 QNPTPAQggSVKQEAKLIQGIQQDVAKKIAKDIRDLKLKCKAIVEGDKLRVSSasRDTLQEVIAALKERDYgQPLQFTNY 164 Atopobium vaginae P...
EGF23764  85 NKPQSASgaSVRQTASLIQGISKDVSKKIAQDIRNLKLKCKAVVEGEKLRVSSasRDVLQSVIAALKEQDYgQPLQFTNY 164 Atopobium vaginae D...
AEB07093  85 DSPQPASggTTRVVGHIIEGIDQQTAKRISKDIKAMKLKVRVTIETDQLRVFSasRDVLQQVIQMLRDNDYgQPLQFVNY 164 Coriobacterium glom...
1IN0_A   162 R 162 Haemophilus influenzae
EEA90196 165 R 165 Collinsella stercoris DSM 13279
EBA38779 165 R 165 Collinsella aerofaciens ATCC 25986
EGX67595 165 R 165 Collinsella tanakaei YIT 12063
ACV51213 165 R 165 Atopobium parvulum DSM 20469
EHF01853 165 R 165 Olsenella sp. oral taxon 809 str. F0356
ADK68074 165 R 165 Olsenella uli DSM 7084
EFL43756 165 R 165 Atopobium vaginae PB189-T1-4
EGF23764 165 R 165 Atopobium vaginae DSM 15829
AEB07093 165 R 165 Coriobacterium glomerans PW2
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