4H3T,4U7U,4F3E


Conserved Protein Domain Family
CRISPR_Cse1

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pfam09481: CRISPR_Cse1 
CRISPR-associated protein Cse1 (CRISPR_cse1)
Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.
Statistics
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PSSM-Id: 462814
Aligned: 82 rows
Threshold Bit Score: 155.646
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4H3T_A        19 PVRFRd-GRRSEVSLRDIFVLA-HTIVGFDVDFPTLEPALLRLVLALAYRIlrGP-KD--DaeWGRLWeaDRFSEDAIDD 93  Acidimicrobium ...
WP_011769949  10 STSQ---GK---ISLKTILTG--EQNYQLQYYFDEIQLAMLQLLSSLSTVVl-QPtVQelKdyLK-----NGLTPEQYEA 75  Psychromonas in...
WP_014150131  10 PVSLN--GEAQRISLKQLLCDKqKQDWHLAVLRDDMDLAALQLLVCLVQVV--LMpEDakA--LKKRWs-EPMPELEYEQ 82  Methylotuvimicr...
4U7U_M        10 PVRPRngGKVQIINLQSLYCS--RDQWRLSLPRDDMELAALALLVCIGQII--APaKDdvE--FRHRIm-NPLTEDEFQQ 82  Escherichia col...
Q74DD1        10 PVRplpaGAACKLTLRQLLCE--DGRWELCLPRDDMELAALQLLICMTQVF--FPpQStaA--LKQRIv-APLSLDEFES 82  Geobacter sulfu...
WP_013316072  11 PVVGAd-GHRTRISPRQLVN---DDIIDLACPRPDLQGAAWQLLIGLLQTA--YSpPDddA--WEDIW--HGGLGKGWAK 80  Dickeya dadantii
WP_002442771  10 PVVLEn-GERARISLSELLD---NRILDVAYPRADFQGAAWQMLVGLLQCT--VApEDegA--WEETWf-DGIDPDKWQQ 80  Shimwellia blattae
Q8ZME7        13 PVRFKd-GSTGKLAPVDLAD---ENVVDIAATRADLQGAAWQFLLGLLQCS--IApKRykN--WEDIWf-DGLHADVLHK 83  Salmonella ente...
CBL44342      10 CCVSFe-GEKECISPIGLGG---AQWRDIRSARPDFRGALYQFLIGLLQTA--YApEDldE--WRERFa-NPPDTEILSA 80 
BAK75522      13 PIQRKd-GSRDLIRPCDIADSGpNPPQELLAPRADFRAALYQLLIGLLQTA--FApDNeaA--WRSRFv-TPPSSEELAA 86 
4H3T_A        94 YFARWRHRFDLFSKE-FP--FFQVADLepagkggvkt---anslvayapSG----NNVPV--FTPITDrteLALSPAEAA 161 Acidimicrobium ...
WP_011769949  76 ALDKVESQWF------ESdcFMQskpptnakwpda---pitkllsgiecGT----SANAMglFSEIEQ---AEISCTDCM 139 Psychromonas in...
WP_014150131  83 AIQPFISWFDLLHAE-TP--FMQSATVtpekgnknwas-lqklfiglpeKTstsaSSNGF--FNTPDEi--QAVHLGDAA 154 Methylotuvimicr...
4U7U_M        83 LIAPWIDMFYLNHAE-HP--FMQtkgvkandvtp-----mekllagvsgAT----NCAFV--NQPGQG---EALCGGCTA 145 Escherichia col...
Q74DD1        83 GCAPYREWFRLDHPD-FP--FMQvrnvsakdptp-----mdkllagltgAT----NSCFV--NEPGLG---ACLCGGCAA 145 Geobacter sulfu...
WP_013316072  81 ALTPLAPALWFGAKAkKPa-FMQygvgpagkvrp-----iadllvnaagEQpltfNRQHV--LTHGPV---EAICPHCAV 149 Dickeya dadantii
WP_002442771  81 ALAAIAPALQFGPE--KPa-FLQsfdpldsepgt-----iagllidapgGNtlklNKDHF--VKRDST---TQICPHCAV 147 Shimwellia blattae
Q8ZME7        84 ALAPLEHAFQFGAE--TPs-FMQdfeplsgekvs-----iasllpeipgAQttkfNKDHF--VKRGVT---ERFCPHCAA 150 Salmonella ente...
CBL44342      81 AFATWQDAFHLESD--GPa-FMQdlalpqevnql----pvlellidagsASnlyfNKP----IQN------HGLCESCCA 143
BAK75522      87 AFAPWADAFVLDNPG-GPa-FAQdldpltapelkanllslrnllidagsD-----SNSYF--NKPSDD---EGFCPSCTA 154
4H3T_A       162 RWL-------VERHAFGSAsdktgakgnpkvkggkdtpaigyLAWIGFVAPVGQT------------------LRETLLL 216 Acidimicrobium ...
WP_011769949 140 HALnynlhmnIKGECFGPTgat-----------------girGGGAISTLIAGEN------------------LKQTLLN 184 Psychromonas in...
WP_014150131 155 IAL-------FQQATNGFSl----------------------GGAAFSVGLKGSMplttl--------vlsenLRKTIWT 197 Methylotuvimicr...
4U7U_M       146 IAL-------FNQANQAPG-----------------------FGGGFKSGLRGGTpvttf--------vrgidLRSTVLL 187 Escherichia col...
Q74DD1       146 IAL-------FNQSSNAPS-----------------------FGGGFKGSLRGGApvttl--------vqgehLRQTVWL 187 Geobacter sulfu...
WP_013316072 150 LAL-------YARQSHAPS---------------------------GRRSVHAAApamktllt---lqdhrqpLWRKLWA 192 Dickeya dadantii
WP_002442771 148 MAL-------FSVQTNSPA-----------------------GGAGYRVGMRGGGplttlavp---ddentfpLWKKLWL 194 Shimwellia blattae
Q8ZME7       151 LAL-------FSLQLNAPA-----------------------GGKGYRTGLRGGGplttlvelqeyqgerqtpLWRKLWL 200 Salmonella ente...
CBL44342     144 QAL-------LTLQLNAPS-----------------------GGRGVRTSLRGGGpltslll----pvgenatLWQKLWL 189
BAK75522     155 QAL-------FTLQTNAPA-----------------------GGRGIRTSVRGGGplstlv------tvegltLWQQLWL 198
4H3T_A       217 NLVpwqyrnl----irggedDVPaWErdplgptrV-------XRAPDGVCDlfTWQGRRIRLFperrg-----daivVPR 280 Acidimicrobium ...
WP_011769949 185 NTIakdyfndy-aqldsdaeQRPmWV--------AplsgsvyQASKIGINRglFALAYHIGFNiedkpcl-cdvcgsESE 254 Psychromonas in...
WP_014150131 198 NVLskaflqekapellsaeiRQPtWVi-------QphtdkqeHALQIGLLRglFWQPAKIKLE--------------VKN 256 Methylotuvimicr...
4U7U_M       188 NVLtlprlqkq-fpneshteNQPtWIk-------PiksnesiPASSIGFVRglFWQPAHIELCdpigigk-csccgqESN 258 Escherichia col...
Q74DD1       188 NVLseerltqiipwhhatrsQQPtWVa-------PikagetiPSQAIGVLRglFWQPGHLELMppqgeqa-ciccgfVEK 259 Geobacter sulfu...
WP_013316072 193 NVIpgvhg-------hcvseVFP-WLa------sSgihdeavTPESIAPLQsfWEMPLRIELDfahtqtghcelcgeASE 258 Dickeya dadantii
WP_002442771 195 NVLeqetppd----paqfplIFP-WLaptr-isdKagn--mvTPENAHPLQayWGMPRRIELDfattrpgccdlcgeEHP 266 Shimwellia blattae
Q8ZME7       201 NVMpqdtadlp-lpdqcdatVFP-WLaatr-tseQana--vtTPEQVNKLQayWGMPRRIRLDfatlqsgccdicgaESD 275 Salmonella ente...
CBL44342     190 NVLpqdvldqp--piktpsdVLP-WLaatr-tsdDkgg-qetPPESVHPLQayWSMPRRIRLDistahhgdcslcgaSDV 264
BAK75522     199 NVLpldvlghe--apvrqadLIP-WLaatr-nseDgre--tsCGDNAHPLQayWGLPRRIRLDtdaiqsgtcavcgqSHE 272
4H3T_A       281 VLICAGDEVDR--RAARDv-----------DPHVGWr-XESRRGAEVSYVPLRARPGQQVWRGLSSVLA---------LG 337 Acidimicrobium ...
WP_011769949 255 QSVKTFNREKYkgNYGSTkngreagagwwpHPYTPR-----TIKEEGAFAVCARDQNWQSWQELGSYIVgk------eTD 323 Psychromonas in...
WP_014150131 257 DLATGFFKNAGmcSVPGFw----------qHPHTPIdiLRLHTGNAKEKPFLSARNDLPLWGQMLCFFYtnkqlkivdAQ 326 Methylotuvimicr...
4U7U_M       259 LRYTGFLKEKFtfTVNGLw----------pHPHSPC--LVTVKKGEVEEKFLAFTTSAPSWTQISRVVVdk-----iiQN 321 Escherichia col...
Q74DD1       260 QVYAGFNKAKFnyTIDGLw----------pHPHGPR--ISSVKKGEREEKFVSFTTAAPAWTHLSRFVVqrq---ttnSK 324 Geobacter sulfu...
WP_013316072 259 HLLTHFRGDVRaaRHEHRe-----------HPLTPY----RQSVQDGSLLPVAGQLQGLAYREWPGLVL----------G 313 Dickeya dadantii
WP_002442771 267 ALLLQMRTKNYgvQYESw-----------lHPFSPY--RQALKDPSAPWLALKGQPGGLSYKDWLGLLLkg------eDK 327 Shimwellia blattae
Q8ZME7       276 ELLGFMTVKNYgvNYDGw-----------rHPLTPY---RAPVKDQNAFFSVKPQPGGLIWRDWLGLSQnn------qTE 335 Salmonella ente...
CBL44342     265 RLFRHYYTRHGgtNYTGAw----------tHPLTPY---CLDSNGKKPPISIKGRQAGRGYRDWLGLVLg--------ND 323
BAK75522     273 RLYTRYRTRHGgvNYSGAw----------pHPLSPY---NHDAKQEKPPLPVKGMAGGVAYRHWLGMVLg--------GD 331
4H3T_A       338 AEE----QRA-GVLSFVEglqsr-----gialVSLLVTSAKFgnxSTTLDDLAYDRLDTPLAVLnqEDPAAAT-VAIDAV 406 Acidimicrobium ...
WP_011769949 324 KAT----LEPaYIIKQFQymkt-------prqTNLLVGGNia--dQGGITGRVYDLYSMPSSLN--KHLSKVTqVLDSGL 388 Psychromonas in...
WP_014150131 327 QEG----TSCaLVVQQYQdnstw-----rgrnIKLAVGGYVKggsAESLAGRKHETYSLSTNWE--NKSAEMDhLIKMGL 395 Methylotuvimicr...
4U7U_M       322 ENG----NRVaAVVNQFRniap-------qspLELIMGGYrn--nQASILERRHDVLMFNQGWQ--QYGNVINeIVTVGL 386 Escherichia col...
Q74DD1       325 EEG----QEPaAVVRQAQgll---------nkLRLAVGGYrn--nQASILERRHELIFLNDGWS--GHTEVVHaLVGQAV 387 Geobacter sulfu...
WP_013316072 314 EQGgeyhTLPaRAVQLNHqrdp------lrckVGLWCFGYdl--aEGKG-GWYEHHIPTWG-----EVTPAILdYLPLAV 379 Dickeya dadantii
WP_002442771 328 FNR----IQPaRAVRAAQqkg--------vvsLSLWCFAFdf--dNAKVRCWYQHRLPVLNIAD----AGSFRtEIQLIV 389 Shimwellia blattae
Q8ZME7       336 ANY----ESPaQVVKVFNarsl------tdvkAGIWGFGAdf--dNMKIRCWYEHHFPLLMTEG-------LIpDLRKAV 396 Salmonella ente...
CBL44342     324 DHQ----PDAaKVVAHFTakln-------kpaVRLWCFGYdm--sNMKALCWYDSTLPVHAIPA--DIQRAFTkSVKQIL 388
BAK75522     332 DGL----QRPaKVVEHFYahreplitrhlqrpGALWACGYkm--dNAKAVAWNDSRLPLYRLPA--ERWMDFRlLVGELL 403
4H3T_A       407 TFAAHAAQALGYVAEARYLSYDLSFHEESkrhrvpegkaalakaaRSALAEEIYGRLDAPYRHFLTGLANIDdl--erP- 483 Acidimicrobium ...
WP_011769949 389 DQKNRLSQAFNKMFGAGYDKNFVGg-------------------iKENAMYRFTANAQQIIQRTLLDVERKE------At 443 Psychromonas in...
WP_014150131 396 EVYKKLDWAMNEFARIAIDKGKHKGKESGfkk-----------avKGKAKQAYFENSESMMHSILRKL----------Aw 454 Methylotuvimicr...
4U7U_M       387 GYKTALRKALYTFAEGFKNKDFKGAGVs----------------vHETAERHFYRQSELLIPDVLANVNFSQ------Ad 444 Escherichia col...
Q74DD1       388 GYRDALNKALFVFSTGFKEIKGAGVk------------------vHELAKEQFYRRSEDTVLDTLARIDFEQ------Aa 443 Geobacter sulfu...
WP_013316072 380 QMADDAHSLLCQSVQAAGVGADk---------------------hCCTIDVTFWQETEQFFKRLYDAIAGGMs-----Va 433 Dickeya dadantii
WP_002442771 390 ALASGSLSILKSALKNAKFENPKEAKf-----------------dTSMVDTAFWQETEPAFRQLAAALAENPrphnaqTc 452 Shimwellia blattae
Q8ZME7       397 QTAARLLSLLRSALKEAWFADAKGARg-----------------dFSFIDIDFWNLTQGRFLNLIHDLENGHk-----Pd 454 Salmonella ente...
CBL44342     389 DSANDMATVLHKQVKAAWFRRPGDVg------------------aEPAVQQSFWQGSEVTFYRVLNELSALDfereadLa 450
BAK75522     404 QIAEESAALLARAVREAWGSESGDPA----------------------VAQGFWQQSEAGFYRSLAEAVELPdgahrtTa 461
4H3T_A       484 --RAEWAALVEAVARDL 498 Acidimicrobium ferrooxidans DSM 10331
WP_011769949 444 elRKTAVIELKQEAQRI 460 Psychromonas ingrahamii
WP_014150131 455 edIASYQKQFAALARKI 471 Methylotuvimicrobium alcaliphilum
4U7U_M       445 evIADLRDKLHQLCEML 461 Escherichia coli K-12
Q74DD1       444 laLLAMGDGLHGIVVGL 460 Geobacter sulfurreducens
WP_013316072 434 eaLKAWQNQLYLYLIGT 450 Dickeya dadantii
WP_002442771 453 qaLKAWERALHHYLLQF 469 Shimwellia blattae
Q8ZME7       455 erLNKWQRELWLFTRHY 471 Salmonella enterica subsp. enterica serovar Typhimurium
CBL44342     451 lvYRSWLLDTRRQVLEL 467
BAK75522     462 plFKRWLEQTRQLVLRQ 478
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