Conserved Protein Domain Family
M14-like

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cd06905: M14-like 
Peptidase M14-like domain; uncharacterized subfamily
A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.
Statistics
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PSSM-Id: 349476
Aligned: 78 rows
Threshold Bit Score: 279.117
Created: 13-Nov-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative active
Feature 1: Zn binding site [ion binding site], 3 residue positions
Conserved feature residue pattern:[HED] [ED] [H]Click to see conserved feature residue pattern help
Evidence:
  • Comment:Metallocarboxypeptidases share the zinc binding motif HXXE...H, where the zinc ion is penta-coordinated to ND1 atoms of the histidines, OE1 and OE2 atoms of the glutamic acid, and to a water molecule in a slightly distorted tetrahedral manner.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                             #  #       
YP_001634750   4 IDFTRYYRPHEVEAALKAWAEEYPh-lCSLRSIGTSYEGRSIWLLTLTNQATGad--deKPAFWLDANIHATEVTGCMGA 80  Chloroflexus au...
KPJ98154      26 LTYDNYHQPNDVVSLLKSWTSKYPq-lTKLVNIGKSSGKSDMFVLRIAAQGKGsldpdsRPAVLVSANVEGYHLVGTEAA 104 Nitrospira bact...
OFY55460      23 PPVTKYHTPAETSAWVKDYAAAHPg-tVKVHKLAATYGGQAFEVVEIGSETQAqk--ktAPAVLVAANLEGTTPLGTEAA 99  Bacteroidetes b...
OQX95818      26 LPAKNYHNYSSLTKSLKELAAKNKs-iVKLSSIGKTYQGRDIWALQITGNNGKka--ldKQALLVCGNLEGDHVIGSEVA 102 candidate divis...
AMM52221      22 WTQRDYNSYEQLTARLKKIGLQYSr-lCTVTSIGKTATDKEIWLITLGRENAAn-----KPAIVITAGVHATQLATTELA 95  Rufibacter sp. ...
ADB18460      30 SGLAGYADYQTLQQRVKKLDEHPR---IEVRSIGKSLEGRDLLMLVFSGKDDKika-daKPALAIVGNIEAAHLLGGDLV 105 Pirellula stale...
OGD19633      24 VAFDRYHAPAELASALREYAAANPa-fARLHKLAQSPGGREVIVIEIGPEAGRae--ktVPAVFAAANFEGVVPLSAEAA 100 Candidatus Amin...
OUT45339      16 PPWDGYLDEAGVSGRLNGWAAAHPx-rVRVESYGTSREGRPLFVATLASDLETad---sKSAILVVAALDGLHPAGTEYA 91  Phycisphaera sp...
OGD32518      28 WTFDRYHRPDELTAALQELARANPg-vAKIHSLAKSAGGRDLIFIEIGPEAGEsq--kpLPAVFVAADMEGTVPISAEAA 104 Candidatus Amin...
OAB62554      46 QPPRAVLTETPTASRIVAAGRAGRvlaVDRFRIGSTANEQPIYVYRVSQGQGDpd---aKPGLLVVAGIDGRHETGPTVA 122 Leptolyngbya va...
Feature 1                                                                                        
YP_001634750  81 LHVIQTVLTGYGh-dPNLTALLDe-------RALYIVPcLNPDGMEQa----LTSPVYVRSGTRRYPftddrdglypaDI 148 Chloroflexus au...
KPJ98154     105 LMLAEKLLTKYGs-dKKVTSFLEk-------RTVYVAPlLNPDVSQAyf-skTRYERLRNRHPMDDDlddlvdedgpdDL 175 Nitrospira bact...
OFY55460     100 LRLIEEIGKDPEr-yKNLTWYVLplgnpdgaARLHEKP-LRIDGRNL-----RPWNDDADELTDEDGp---------dDL 163 Bacteroidetes b...
OQX95818     103 LGIARYLIEGYNk-nKEITELLDk-------RTFYILPrVNPDGAELff-qnMLAEYSGNLNPRDDDydwetdedgpeDL 173 candidate divis...
AMM52221      96 VQMAEQLLLSATi-hDSTAQLLKe-------KTIYILPnVNPDASEQyh-esLRWERTGNAQPRDDDrdgrifedpfdDL 166 Rufibacter sp. ...
ADB18460     106 LALCDDLVARVDs-dEKIAALLDh-------YTLYVIPrPDPDGSEKcf-aePRTKVEGNARKTDDDrdfevgedpadDL 176 Pirellula stale...
OGD19633     101 LYLIKQLADRPDa-rKSLTWYVLpcpnpdaaARYFEKP-LLADARNGr---pRNDDQDDRADEDGPD-----------DL 164 Candidatus Amin...
OUT45339      92 IRIGELLLSDHA---ELLDETTVy-------ILPRANP-DGIAANHGg----LNAGRRGVSRLVDADrdgavdengprDL 156 Phycisphaera sp...
OGD32518     105 LYLVRVVLEKADlraDRTWYILPcgnp-daaSLFFEKP-LRRDPRNA-----APHNDDMDDQTDEDGv---------eDL 168 Candidatus Amin...
OAB62554     123 RELVGHLEREADl--EHATVYVIp-------RVNRDAQ-GRDDTTAAvpggtRTPEDADRDGRMDEDgp--------tDL 184 Leptolyngbya va...
Feature 1                                                                                        
YP_001634750 149 DGDGLILQMRVVDp------dGGWKVSERDPRLMr--rRAPDERgg--tYYRVYTEGLIRNFDGyevKIAPpaq-gldFN 217 Chloroflexus au...
KPJ98154     176 NKDGLITQMRVKDp------eGTMIADPSDTKLMrtadFKKGEKg----IYKIYTEGLDNDGDG---LYNEdppggveIN 242 Nitrospira bact...
OFY55460     164 NGDGLITQMRYKDp------dGTMIPDEKDPRLMkradPTKGEKg----IYKVLTEGIDNDKDG---QYNEdgp--ggTN 228 Bacteroidetes b...
OQX95818     174 NGDGLITLMRVKDk------eGSWYADKKDPRIM----KKKDKDtpvesLYNIYPEGFDNDGDE---LYNEdgpggynIN 240 candidate divis...
AMM52221     167 NGDGLITMIRVKDs------lGTHNVSSHDSRVMreadKAKGEKg----SYFLYTEGLDNDKDG---LFNEdaeggvnFN 233 Rufibacter sp. ...
ADB18460     177 NGDGIVSWMRVEDp------tGKWMPHPNDPHLMveadRSKGEVg----RYHVYPEGRDDDNDG---ELNEdaslgvsLD 243 Pirellula stale...
OGD19633     165 DGNGVITMMRVKDp------aGEWLPVPGETRLMkkadWSKGERg----VYKLYTEGLDNDGDG---EYNEdgpggvgIA 231 Candidatus Amin...
OUT45339     157 NGDGVISQMRWLDppl--arpATHLPDPAEPRLMktpdRSKGEEa----THLLLIEGDDADGDG---LVGEdgpgdvrLD 227 Phycisphaera sp...
OGD32518     169 NGDGLITQIRIKDp------eGEWIPIPASPRLLkradWSKGEKg----VYKLYTEGLDNDGDG---VYNEdgp--ggVD 233 Candidatus Amin...
OAB62554     185 NGDGHITMMRIDRpvprygieLTHVVDPDHPRLMrradASKGEVa----THALLPEAADQDGDG---QMGEdgaggvdLN 257 Leptolyngbya va...
Feature 1                                                              #                         
YP_001634750 218 RNFPYIWAPegvqrGAGPYPTSEPEIRAAVEFLTS---------HLNVSGAISYHTys-gAILRPYSdk----------- 276 Chloroflexus au...
KPJ98154     243 RNFPHDFEYyv--kPAGLWPASQKETIAILQFLDS---------HKNIALVLNFSTentfLNIQQTGqaraaad---kvk 308 Nitrospira bact...
OFY55460     229 IGITFPHLYgynqpGTGAWSGSESETYSLMQFVAA---------HPEIAMTMTYGSt--nFCLVPMKggrkstanlsaik 297 Bacteroidetes b...
OQX95818     241 RNFPHNFGYki--kGYKLYPASESETQAVIDFMNKyqekfetapHKNICGVLLFSKy---DNLAAGSgiesgka---mfp 312 candidate divis...
AMM52221     234 KNFSYGFEEfk--rETGEHPMSERETKAFADFMLS---------ARNVHSVFVLGPa---TTLLHAL------------- 286 Rufibacter sp. ...
ADB18460     244 RNFPHRYEAfe--kLTGEHAASEPETKAIIDFLFD---------HRNVIGVFALGTd---DNLFHPW------------- 296 Pirellula stale...
OGD19633     232 VQFPHLFKFfs--pESGDWPGSEQESFALLKFLND---------HKEIGLTFVFGSt--nFCLNPPRggrkgeadltqik 298 Candidatus Amin...
OUT45339     228 RNFPHLWKAhs--aEAGPYQLSEPESLAIAEFVLA---------HPRIAAAVVYGPn--dSVVAIPA------------- 281 Phycisphaera sp...
OGD32518     234 IGVTFPHLFkffspETGSWSGREAETFALLKFFDE---------HREIGLTFVFGEt--nFCLIPPRagrkgeadlnqik 302 Candidatus Amin...
OAB62554     258 RNFPYRWPEfg--tSSGAYPLSEAESKALATWLLE---------RPNVMAAIVYGPh--dTIINVPA------------- 311 Leptolyngbya va...
Feature 1                                                                                        
YP_001634750 277 ---pDDQMPIDDL----------WTYKELGNRGQEi------TGYKHVSVY------------------HGFRYHPREv- 318 Chloroflexus au...
KPJ98154     309 vparFASFLGLDPdeey---tlkEIVDVINASGLTggq--evTESQVAQFLglgaamsi--dredmpyiQEVQKDYKDal 381 Nitrospira bact...
OFY55460     298 ipqrYVRMLNADPvktytldevkEMMKAIVPPGTIvdd-amvAGMLDMGAVvnpieadlkvftalsekyKEFLKGKGFta 376 Bacteroidetes b...
OQX95818     313 efkrKGEVQPQRSfrf----grrRSGDRSQQQGKPkdpqskkTDKNDVTLF------------------KNVSKQYKEit 370 candidate divis...
AMM52221     287 ----PGSKPEVTT----------PALLKAVQKDDS-------TIYKISKLY------------------TSLIPTANAae 327 Rufibacter sp. ...
ADB18460     297 ----KPNQQAESQ----------RIAQHIHSADAPlq---dfLAAEFKKIHg----------------gNDCPAREPH-- 341 Pirellula stale...
OGD19633     299 vperIAGFINADPnktytmaeimDIIRPLMPEGVP-------VNESMIASFlglgavvnp-lpedlkfyKELSDKYKDfl 370 Candidatus Amin...
OUT45339     282 ----TDKKDQTGRt---------PVGIDAGDKALYt-----kISEAYGEHTs-----------------QKRAFNDDG-- 324 Phycisphaera sp...
OGD32518     303 ipeqMAGFLNADPnrtytmaeimEMVKPIVPPGME-------VTESMIASFlglgavvnp-leddlkfyKELSEKFKEfl 374 Candidatus Amin...
OAB62554     312 ----SSGYDHTGRv--------pTGLERADKELMDr------LSEQYKEAT------------------KLSQADKVSl- 354 Leptolyngbya va...
Feature 1                                                                           
YP_001634750 319 ---------------mRGAFDDWAyeqlGIFAFTVELW---DMIGEAGikd--rdfIEWFRDHPEED 365 Chloroflexus aurantiacus J-1...
KPJ98154     382 kkaeldypenrakgvrKGSFVAYCyfqyGVPIFSADLW---AIPEPKKkpdekekdALTIDKLKTMS 445 Nitrospira bacterium SG8_35_4
OFY55460     377 krld-------pardkDGSFELWSyyhlGLPTFSQDFW---GLPEPPKtdtaakstPRTEPQAKPAE 433 Bacteroidetes bacterium GWF2...
OQX95818     371 gldy------avsekpVGSMLEWSyfqyGVPSFSANLW---SLRKDKKeka---dsTDQKQEKPDEQ 425 candidate division KSB1 4572...
AMM52221     328 v------------mptGGDVVQWAhvhyGRFSFSTPAW---WVPQITNlpk--sttQLEKQDLSFLE 377 Rufibacter sp. DG15C
ADB18460     342 ----------------AGSFSQWAyfhyGRWSLVSRGW---WVPPMPLkp----vdAKTAEKKSEGD 385 Pirellula staleyi DSM 6068
OGD19633     371 kkaklddkrlepsqdrDGSFELYAyyqlGLPSFSLDFW---TLPEAKEdkkepditPDKLEKMTNDE 434 Candidatus Aminicenantes bac...
OUT45339     325 ----------------SGGLHSWLyahrGIPTVSTNGW---GRPDPTVae-----pVEPALDPEGDQ 367 Phycisphaera sp. TMED9
OGD32518     375 kaakldakrldpapdkDGSFELWSyyhlGLPSFALDFW---TLPEVKEekkneeitAEKLEKMTNEE 438 Candidatus Aminicenantes bac...
OAB62554     355 ----------------DGSFAGWSyahlGLVTIATNPWqrpEAPKEED--------TNEGGDNDAAE 397 Leptolyngbya valderiana BDU ...

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