Conserved Protein Domain Family
CE4_DAC_u3_5s

?
cd10972: CE4_DAC_u3_5s 
Putative catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases which consist of a 5-stranded beta/alpha barrel
This family contains uncharacterized bacterial polysaccharide deacetylases. Although their biological functions remain unknown, all members of the family are predicted to contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily.
Statistics
?
PSSM-Id: 200594
Aligned: 12 rows
Threshold Bit Score: 290.387
Created: 31-May-2011
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative activeputative metal
Feature 1:putative active site [active site]
Evidence:
  • Comment:based on similarity to other CE4 superfamily members

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                        ##                                                                   
REF_jgi:Cthe_0175 141 PAGCIPIIFTFDDGTSGQFnlvee--ngtlkVNKKSAVGIMEEFYEKHPDFGLKGTFYVNLgnstf-----------ega 207 Clostridiu...
CBK88075          104 EAGKSPICLTFDDGLENNIlvtgtdkegninIDPNCAVGILESFKKKYPDFNVTATFFVNGglfr-------------qp 170 Eubacteriu...
ZP_02863052       142 PAGKTPILLTFDDGLKSCFsliknk-egklvVNNDTLIGILEEFKSEHPDFGSGGVLYITEnpfeyday-----ynnkte 215 Anaerofust...
YP_001319450      124 EAGYTPVVLTFDDGNDNNFnmiedg-dgqwvIDPNSAVAILVDFHEQYPDFPLEATFFINGgspf------------gqs 190 Alkaliphil...
YP_003134273       67 PAGTHPVVLTFDDGDPSTIrme------gdrVAPDTAVGILLDVARENPGFRPTASVYVNEepfg-------------gg 127 Saccharomo...
YP_003318590      120 PPGKRPVVLTFDDGVVSQFrylvde-ngqktIDPNCAVGILEDFFTRHPDFGRGGLFSILPrapfawp------depeql 192 Sphaerobac...
YP_003381684      127 PAGRTPVVLTFDDSTPGQFalda-----agrVVPDTAVGIMLAFEERHPDFPAVGSFYLNRspfg------------lsg 189 Kribbella ...
ZP_01886073       115 PAGMTPFVMTFDDSSAGQFryldk--ngkleIDPDCALGIMEDFKKRHPDFPITASFYVLPaikptlr-------lfaqp 185 Pedobacter...
YP_002759963      156 PAGKTPVLFTFDDASPSQFryiek--ngqlvVDPTSAVGILLDFIRTHPDWKPKGLFCLLPaaaaghaffgekgidgqks 233 Gemmatimon...
YP_001916618      143 PPGKTPVVLTFDDASKGQFgyiee--dgektIDPDTAVGIILEMKEKYDDFTIGGTFYVNYipvpf-----------rdk 209 Natranaero...
YP_001542860      140 PLGKSPVVLTFDDSSDGQFryle-----dgtLDPTSAMGILQAFAAEHPDFPAIAVFFPLIdvdvker------vlfgqp 208 Herpetosip...
YP_003936485      116 EKGHTPVVITFDDGNENNFryld-----ngeIDPTCAIGILESFKADFPDFNTTATFFLNQlafg-------------sk 177 Clostridiu...
Feature 1                                #   #                                      ###               
REF_jgi:Cthe_0175 208 gTLQQRLQYLVDkGFEIGNHTYTHINLkdttsaQKIQEEIAKNQRTIAEl-iPGYKMTTFSLPYGLPsve--glhSYVIK 284 Clostridiu...
CBK88075          171 eYNEQIIKWLVEnGYDVGNHTYSHVDFttt-dgQIAQQEVGSVYAMLDEi-iPGQYVNIVALPFGSPysydhemiPYIQS 248 Eubacteriu...
ZP_02863052       216 gDYQDKFRVLTDlGYEIGNHTYHHYNMnnl-nkNEIMEEIGKVNNLVYKn-nNKIPTSYLAYPYGDKpke--enlKAVKN 291 Anaerofust...
YP_001319450      191 eFVEYKLNYIVEkGMDIGNHTNTHINFtna-naEKIQEELGRINEMVNNi-iPDYEVNTLALPFGSKpkde-alrKYLVE 267 Alkaliphil...
YP_003134273      128 eAGRRALRWLADnGFEIGNHTYGHTNLgaa-spEAAQEAIAMGDRLIRDa-vAGYEPASLALPFGARp-------DPGEL 198 Saccharomo...
YP_003318590      193 eYAEEKLRWLVEhGYEIGNHTLSHANLrel-sdEEIKAELAGAVDMIREy-vPDAEVEVIALPFGMYppg---gdDTLLR 267 Sphaerobac...
YP_003381684      190 sAAVQALRRLHAlGCELGNHTWSHPNLrqi-daGKVQEEFGRLSASVEEa-vPGVAPRTMALPLGIHpr----drRLMAR 263 Kribbella ...
ZP_01886073       186 dYQKQKLEWLIKnGYEVGSHGWFHVPLnkl-ddAGVQKHLAMFVKEIRNf-iPGYEAESFALPLGMHak----nrALESK 259 Pedobacter...
YP_002759963      234 aWRFQKLQFLVQqGFELCNHTLWHAQLnky-sdAVVQEQFARGAMAIDSa-vPGYKVRGMALPYGVWpk----nrALTLS 307 Gemmatimon...
YP_001916618      210 eLYEEKIAHLDElGFEIGNHGYNHLNLkdl-daQEIQEELGRPHKITENi-iPEYQLESLALAFGAWpgqd-dlkEFVYS 286 Natranaero...
YP_001542860      209 eFATQKLQEIVAlGGEVGTHTYTHQRLdea-daEQIQWQLAFSIKELEErigDGYQVTSLSYPLGMFpe----deSLVRE 283 Herpetosip...
YP_003936485      178 sQEVDKLKFLAQnGYSIGNHTLTHLDLkka-spEDIQKEIALLKSTHESt-yPELNIQTLALPYGAKpsd--enyALTYK 253 Clostridiu...
Feature 1                                                                                             
REF_jgi:Cthe_0175 285 GSYe------GVEYEHAAIMEVGWDPa--hSPVSKDFNPLSTHRVRASGInpvdcdlaw----wlknlsreeQYISDGDP 352 Clostridiu...
CBK88075          249 GLYk------GKQYTTQSMLQVAWEAd--ySPYSNQFNPAFIKRIRAYDNngqdfdiem-----nfttlettKYISDGDP 315 Eubacteriu...
ZP_02863052       292 GEYk------GVKYKMQSAVLAAPEPpyftNPINKDFDPYYISRAIANSGqhmdmywyf----kyykkhpekKYISDGDN 361 Anaerofust...
YP_001319450      268 GTYq------GNPYKHVAVLEVGWDPy--hSPYHESFNGATIHRIRASETkvdgvgmydw--mkaldqggrlRYISDGDP 337 Alkaliphil...
YP_003134273      199 ALW-------GEGYDYRAVLLVGANPa--pSPFSAEFDAAAVPRIRSQGPdgheaefgstawldklaanpdlRYTSDGDP 269 Saccharomo...
YP_003318590      268 GFTy-----eGREYRFTGALMVGANPa--pSPVDAEFDPFWTPRIQATEEvlaewfay-------aadnpaiMYASDGNP 333 Sphaerobac...
YP_003381684      264 GGQg------GTAYRNEGVLLVGAGPc--pSPFHRDFEPMAIARIRCSSHqggkgnllmdywldrfaarpdlKFVASGNA 335 Kribbella ...
ZP_01886073       260 GSFe------GTSYNHKAVFLVGSVAs--vSPYSKDFNPLAIQRVQAGDTptgpeafm------kqqdkhgnRFISDGDP 325 Pedobacter...
YP_002759963      308 GSWydakakrTVTYKHEAVFQVAGGPa--rSPYDPAFNPASLPRVPLQGGtkltptldm-----ldkpgpgaRFVSDGNP 380 Gemmatimon...
YP_001916618      287 GEYe------DIEYEHNAVLNVGAEPa--nSPFHKDFDPLDLPRVRADQKrmdqwlsy-------yennpekRYVSDGNP 351 Natranaero...
YP_001542860      284 GESe------GESYTLSAAVDVTGGAs--pSPYSQNFDPYHIRRTQAVDSqleywyql-------feerpdlKFISDGDP 348 Herpetosip...
YP_003936485      254 GLFd------NISYDNIAVLLVGWDPy--fSPYHKDFDFSKIRRVRASETnvdgvglydw--lkayeqgtkfRYISDGNP 323 Clostridiu...
Feature 1                   
REF_jgi:Cthe_0175 353 NTVTVP 358 Clostridium thermocellum ATCC 27405
CBK88075          316 NTIVIP 321 Eubacterium cylindroides T2-87
ZP_02863052       362 TVLSIP 367 Anaerofustis stercorihominis DSM 17244
YP_001319450      338 NVVTVP 343 Alkaliphilus metalliredigens QYMF
YP_003134273      270 TRISYP 275 Saccharomonospora viridis DSM 43017
YP_003318590      334 DTVTIP 339 Sphaerobacter thermophilus DSM 20745
YP_003381684      336 GHVTAP 341 Kribbella flavida DSM 17836
ZP_01886073       326 KKISAP 331 Pedobacter sp. BAL39
YP_002759963      381 KVIAKP 386 Gemmatimonas aurantiaca T-27
YP_001916618      352 DTITIP 357 Natranaerobius thermophilus JW/NM-WN-LF
YP_001542860      349 DTITVP 354 Herpetosiphon aurantiacus ATCC 23779
YP_003936485      324 ATISIP 329 Clostridium sticklandii DSM 519

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap