4EQB,4GL0


Conserved Protein Domain Family
PBP2_PotD_PotF_like_2

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cd13663: PBP2_PotD_PotF_like_2 
Click on image for an interactive view with Cn3D
The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold.
This group represents the periplasmic substrate-binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.
Statistics
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PSSM-Id: 270381
Aligned: 22 rows
Threshold Bit Score: 264.924
Created: 28-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:putative chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the polyamine transporter family.
  • Citation:PMID 9651355

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                                                                         
4EQB_A         10 KLVIYNWgdy---------------------idPELLTQFTEEtg------iQVQYETFDSNeaMYTKIKqggttyDIAI 62   Streptococcus...
ADG71600       49 ILNVCNWgeyiad---------------gskgsMDIIKEFENLtg------iEVNYIIHNSNeeVYAKLKlqtenyDVIT 107  Brachyspira m...
YP_001621257   25 KLLILNWgey---------------------inDDLVLLFEETyg------vEVSISIADSNelFYSKIKsgttayDLVL 77   Acholeplasma ...
NP_810201      31 VLKIYNWady---------------------igEGVLEDFQAYykeqtgediRIVYQTFDINeiMLTKIEkghedfDVVC 89   Bacteroides t...
ADE82414       25 ILKVYNWgdy---------------------igVGVIEKFEKWyqqvtgqpiKVSYVTYDYPeeCFDMIKdqqtevDVFC 83   Prevotella ru...
EFV15332       37 ILRIANWeeyldegdwdddeeielengkkiigrNSMIKDFENWyektyhkkvKVEYSTFGTNedMYNQLTigd-tyDLIC 115  Lachnospirace...
NP_975227     599 DLVVANWgey---------------------idPSLIGQFEQQasqkhnrriRINYQIYNSNeiLYNKLHtv--dyDIMI 655  Mycoplasma my...
NP_950914      42 TLTLFNWgey---------------------lePSIIEKFEKEth------iKVKQVLFSSNelAVTKIKskn-qyDLAI 93   Onion yellows...
YP_001620469   24 ALVIYMPkey---------------------isEDLIDAFEQEtg------iQVALRYFDSNevLLTNAKvn--syDLII 74   Acholeplasma ...
CAK98424      376 DLAVANWgey---------------------itSDLIRDFEKKyn------vKIKYSVYDSNetLYNKLYtt--hyDVMV 426  Spiroplasma c...
Feature 1                                                                                         
4EQB_A         63 PseyMINKMKDEDllvpldyskiegie----------------------------------------------------- 89   Streptococcus...
ADG71600      108 PtdyIIVRMIKNNmiqklnfdllpavkn---------------------------------------------------- 135  Brachyspira m...
YP_001621257   78 PgdyMVEKLIKEDliqqiqfdklsnydpvnn------------------------------------------------- 108  Acholeplasma ...
NP_810201      90 PseyIIERMLKKHlllpidttfahspnymnnv------------------------------------------------ 121  Bacteroides t...
ADE82414       84 PpeyLAERMMKHKmltpidtsfvaqgipnylhg----------------------------------------------- 116  Prevotella ru...
EFV15332      116 PseyMTMKLMAENkilkysdefwdtsdannyyak---------------------------------------------- 149  Lachnospirace...
NP_975227     656 PsdyMVQRLASENylqkidysklniwgkftgngngfnqgnetkdnnkykhlq---------------------------- 707  Mycoplasma my...
NP_950914      94 LseyAIDQLRQSKmletiddgelikddkh--------------------------------------------------- 122  Onion yellows...
YP_001620469   75 PsdyAIEELAAGDylkpldwdridfdkadfs------------------------------------------------- 105  Acholeplasma ...
CAK98424      427 PsdyMVNKLAQEGhleeidyqklndvdknfniikpnpnyhgqdvtertmgneyfndlnvdiatvqktnpefyqncivpst 506  Spiroplasma c...
Feature 1                                                                                         
4EQB_A         90 ---------------------------------nigpeflnqsfdpgNKFSIPYfWGTLGIVYNetmvdeapehw----- 131  Streptococcus...
ADG71600      136 ---------------------------------nidpfffslaydpeGEYSVPYtWGMSGIIYNkknidikeedid---- 178  Brachyspira m...
YP_001621257  109 ------------------------------pymhglqslmatmsegsENYFVPYfWGTFGLMYNnrvpglkealethg-- 156  Acholeplasma ...
NP_810201     122 -----------------------------spfireqinklsqpgeeaSRYAVCYmWGTAGILYNrayvpdsdafs----- 167  Bacteroides t...
ADE82414      117 ---------------------------tspfidnmlqhigeaqgitaKDYTVGYlWGNTGVLINtkfvkpeevns----- 164  Prevotella ru...
EFV15332      150 ---------------------------gvspyikksldqlkyqgqsvGDYTAGYmWGTLGYVYNpkyvsredaed----- 197  Lachnospirace...
NP_975227     708 ---------vnqslldlmlkspihredetkdiitknpngtylntnsiLDYSIPYlWGDLVIVVNptpenieflkknniqf 778  Mycoplasma my...
NP_950914     123 -------------------------------yyelnkdlqdklpsefNNYAVPYfWGKVVILYNknkitqdkinelkd-- 169  Onion yellows...
YP_001620469  106 ------------------------------vnlsnaidqlntggfdiLEYSLPYfWGTVGLIYNntkaglyedlve---- 151  Acholeplasma ...
CAK98424      507 ldpttskcfdknyaaslvngllnvlnknklkkvilqsgesevtqktiVNYSLPYfWGEVSMVINptesnlnflndmfaka 586  Spiroplasma c...
Feature 1                                                                                         
4EQB_A        132 ---------------------------------------------ddlwkleyknSIMLFDGAreVLGLGLNSLGysln- 165  Streptococcus...
ADG71600      179 --------------------------------------------wsilfnedykdMILMSIAPrdAFAAANGYLGfdlh- 213  Brachyspira m...
YP_001621257  157 ------------------------------------------wnayfepnlrptkRVGMYDVAqyAYASSLLYLGldpna 194  Acholeplasma ...
NP_810201     168 --------------------------------------------weclwdkkyagKILMKDSYrdAYGTAVIYAHakele 203  Bacteroides t...
ADE82414      165 --------------------------------------------waflfdskyrgKVIMKDSFsdIYNVFINYAFyddik 200  Prevotella ru...
EFV15332      198 --------------------------------------------wglllnqkyykKITAKDSVrdCYFAVRGMQTqkeil 233  Lachnospirace...
NP_975227     779 knnnkdnene-------------------nknkeveiensslswdilwkaaaagkKVALNNDPknVFMLGSQKLYqkvn- 838  Mycoplasma my...
NP_950914     170 ------------------------------------------qnkgfkylkdtnlKVALCNNArdGLMVGLKATEgkia- 206  Onion yellows...
YP_001620469  152 --------------------------------------------eewnilnnpdySKMIYDSSrdAFMAALYANNfemk- 186  Acholeplasma ...
CAK98424      587 nqnlpttaqgkfgyqrekwassanrdqiklndvknnnvisngiswdilwqaaankRVLINNDPrnLFMLTSEKNYfkpv- 665  Spiroplasma c...
Feature 1                                                                              #  #       
4EQB_A        166 -------------------skdpQQLEETVDKLYKLT--PNIKAIva--deMKGYMIQnn---vaIGVTFsGEASQMLek 219  Streptococcus...
ADG71600      214 -------------------ttneKEILESFDALKKQR--YVVQDYvm--deILYKIRDek---ayIGVTYgGDALTVIkq 267  Brachyspira m...
YP_001621257  195 l-----------------pdttpDGFSKTHLELSRQA--LNQAEFtvfaddALKKDIQann--ldLAFVWtGDFLDMLyv 253  Acholeplasma ...
NP_810201     204 egtvt--------vedlmndyspRAMEVAEKYLKAMK--PNIAGWea--dfGKEMMTKnk---awLNMTWsGDAIWAIee 268  Bacteroides t...
ADE82414      201 sgvan--------rnllaayltnRNIAIVEDLLESAR--PQMKSFdv--edDKRLMSAgk---dwMSITWnGDARWAIde 265  Prevotella ru...
EFV15332      234 tkkfqnqsnykeklssllndtsdQSIQNAGMILSKIK--DNVYSFet--dsGKADLVSgk---vvANLQWsGDGVYSMqq 306  Lachnospirace...
NP_975227     839 -------------------ltkkSEIDEVGKELSKLL--SNSGVSlhs-ddLISLVVRek---fdFAVMYnGDAAYANyv 893  Mycoplasma my...
NP_950914     207 -------------------npspYELNEAKKWLLELKqqKPNLAFin--dqLMDRMKNknneyydIVIAYsGDANFLKeq 265  Onion yellows...
YP_001620469  187 -------------------natsTEINVAKNWLIDAY--SKSNASiks-deILSEAIDnnt-pydVAMVYsGDAVYILqe 243  Acholeplasma ...
CAK98424      666 -------------------pttqMEVDHGYNELATLL--KHNNVAlmn-deLINAVGDgh---fdFAFMYnGDAIYADtl 720  Spiroplasma c...
Feature 1                                               # #                                       
4EQB_A        220 n-----------enLRYVVPTEAs------------NLWFDNMVIPKtv-----kNQDSAYAFINFMLkPENALQNAEYV 271  Streptococcus...
ADG71600      268 n-----------tnINFVIPKSGg------------NPFVECLAIPKna-----eNIEAAHMYINFLCeRQVAYENTKYI 319  Brachyspira m...
YP_001621257  254 dldeg--ldydqktYDIYIPDQT-------------MAFVDSFVIPKks-----rHVDLAHEFINFFLnPDNAYENASVV 313  Acholeplasma ...
NP_810201     269 ana-------vgvdLDYVVPKEGs------------NIWYDGWVIPKya-----kNPVAASYFINFMCrPDIALRNMDFC 324  Bacteroides t...
ADE82414      266 ag--------dntnLQYVVPIEGs------------DCWADCWVIPTtc-----kNIKAASLWINFLCrPDIALLCMEET 320  Prevotella ru...
EFV15332      307 vee-------egikLRYAVPKASt------------NLWFDGWCMLKsgigkdkeKQQAAQAFVNYISrPDNVVRNMYYV 367  Lachnospirace...
NP_975227     894 hnegdddyekassnINFIYGRPNkknekn-nrhestNVFSDNIVLYKda-----qNLDLAYEFINFLYeNSTKISDYVGV 967  Mycoplasma my...
NP_950914     266 n-----------nnLDYFSPTEGt------------NVWVDALVMPKg------sKKTLAYKFINFLRqKENYKNNLAFT 316  Onion yellows...
YP_001620469  244 n-----------ekYSYFVPTWT-------------NVWIDGYVIPKnt-----kHEDWAYEFINFMStYDALLDNATEM 294  Acholeplasma ...
CAK98424      721 faks----hqeasgTKLIITRPRatkawtpetiegtNIWSDNMVLSKna-----rNRDLAYKFMNFIIqNSSALTEEANY 791  Spiroplasma c...
Feature 1          #                                                                              
4EQB_A        272 gYSTPNLPAkellpee----------------------------------------tkedkafYPDVETMKHLEVYekfd 311  Streptococcus...
ADG71600      320 gYATPNTAAlellpdei---------------------------------------kndkriyPDKKNIVYMSKRIseld 360  Brachyspira m...
YP_001621257  314 gYSTPLANVydrianytg------------------------------------ddvwltnwsRAYSDYYPNTENFkgip 357  Acholeplasma ...
NP_810201     325 gYVSSIATPeileekvdttldyyadl--------------------syffdpdadsiqidkiqYPDRKVVERCAMIrdf- 383  Bacteroides t...
ADE82414      321 gYSSAIGTPeilqavtndslpaidls---------------------yffgpeatavhvdsvmYPTKDVISRCSYLrds- 378  Prevotella ru...
EFV15332      368 gYTSVISGGedktiydyikymygsedkksvdydlnyffqqngdnynyvmktseemskgqlyaqYPTQDVMRRSAVMtyfg 447  Lachnospirace...
NP_975227     968 tSPLDSAIEemtaapkeengedegg----------------------tyqdfkniydpithqnGSKYETNNEQLSFtyng 1025 Mycoplasma my...
NP_950914     317 kYNSPYVGLetfpgirq--------------------------------------ieikvndeVYKYDQTTQKTINtywn 358  Onion yellows...
YP_001620469  295 gYSPISEAVyqnlyqdee------------------------------------fnwdndrigYAFSVPYTNFEFFryd- 337  Acholeplasma ...
CAK98424      792 tSPYQQVMDyennynysnahdpesgam-------------------vnyqrdyvpvaklnkkgMYVAQPEMADGSFeit- 851  Spiroplasma c...
Feature 1                          
4EQB_A        312 --hkwTGKYSDLFLQFK 326  Streptococcus pneumoniae TCH8431/19A
ADG71600      361 --drsGILMENLWNNFL 375  Brachyspira murdochii DSM 12563
YP_001621257  358 yasfnQTIMAQLLLMFN 374  Acholeplasma laidlawii PG-8A
NP_810201     384 --gdkTKEVLDIWSRIK 398  Bacteroides thetaiotaomicron VPI-5482
ADE82414      379 --gdrQEVLREIWEKIK 393  Prevotella ruminicola 23
EFV15332      448 --dqaNKKISRMWIDMR 462  Lachnospiraceae bacterium 5_1_63FAA
NP_975227    1026 --kidEYLVNSFNNLLA 1040 Mycoplasma mycoides subsp. mycoides SC str. PG1
NP_950914     359 -diiaFPSQKDYWLFIL 374  Onion yellows phytoplasma OY-M
YP_001620469  338 --vdlKKLMDDAWELVI 352  Acholeplasma laidlawii PG-8A
CAK98424      852 ---dlDSYVLNKYNILI 865  Spiroplasma citri

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