2O1M,4EQ9,4C0R,4GVO


Conserved Protein Domain Family
PBP2_TcyK

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cd13710: PBP2_TcyK 
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Substrate binding domain of an ABC transporter TcyJKLMN; the type 2 periplasmic binding protein fold
This group contains periplasmic cystine-binding domain (TcyK) of an ATP-binding cassette transporter from Bacillus subtilus and its closely related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270428
Aligned: 17 rows
Threshold Bit Score: 254.142
Created: 10-Jun-2009
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:4EQ9; putative Abc transporter substrate- binding protein from Streptococcus pneumoniae strain Canada Mdr_19a binds glutathione, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #  ##                                      #                ##      #    
2O1M_A        16 QTITVGTGT-QFPNICFIDekGDLTGYDVELIKELDKRLPhYKFTFKTXeFSNLLVSLGQHKVDIVAHQXeKSKEREKKF 94  Bacillus subtilis
YP_910119     63 KTVKFVLES-QDPPYSYADknGNPAGFDLTVLKAIDKKLDnYKFEYSVIdYQTALIGTKQGKYDALIGAFfETPARAKQY 141 Bifidobacterium...
YP_300710     35 KEIKVALSAeVNPPYLYTTknNEFIGLDMEYMKLLEKKLPqYDFKYEVGeEESNLVGIGAGKFDMGINWFfKTPEREKQF 114 Staphylococcus ...
NP_390815     36 QTITVGTGT-QFPNICFIDekGDLTGYDVELIKELDKRLPhYKFTFKTMeFSNLLVSLGQHKVDIVAHQMeKSKEREKKF 114 Bacillus subtil...
YP_001487569  34 KIVKVALSAeVNPPFLATNdrNEPIGYNIDYLNEVEKRLPhVHFDYIFGeEESNLIGVGAGKFDMAANWFfSNPEREKRF 113 Bacillus pumilu...
YP_817864     42 QTIKVGSGN-DAQPFAYLDksGKPVGMDIALIQAIDKKLPqYKFKLTLSdFPTLITNLKSGKTTMAMEQIeQNTERKQDF 120 Leuconostoc mes...
YP_766654     35 RTVKIATAA-ESKPLSWGAigVEPQGYEPDVLKAINAKLPqYKFEMEGAaDIAQETGLATGKYDIATGGYyRAPAREKQF 113 Rhizobium legum...
NP_390816     33 QTVIVGTGT-DFPNIAFLNekGELTGYDIEVMKAIDKELPqYTFEFKTMdFSNLLTSLGNKKIDVIAHNMaKNKEREKRF 111 Bacillus subtil...
AAK05035      35 ISVVIATDG-ATKPFTYSDsqGNLTGYDIEVARAVFKKLPqYKVKFQVTdFSGISPGIDSGRYQMGANDFgWEKSRAEKY 113 Lactococcus lac...
4EQ9_A         8 KEIIVATNG-SPRPFIYEEn-GELTGYEIEVVRAIFKDSDkYDVKFEKTeWSGVFAGLDADRYNMAVNNLsYTKERAEKY 85  Streptococcus p...
Feature 1                                            #   ##                           #  #       
2O1M_A        95 LFNKvAYNHFpLKITVLQNndtIRGIEDLKGKRVITSa-TSNGALVLKKWN-EDNGRPFEIAYEGQg--ANETANQLKSG 170 Bacillus subtilis
YP_910119    142 LLSK-PYNYFfMNLIVPEDs-kVESLKDLDGKTLDPIvpTDGRYVAIQNWLkRNPDVKIKVPTVTNqetFQDMFNAVHDG 219 Bifidobacterium...
YP_300710    115 LYQDePYSYAlPLLVVNRDnndIHHLDDLPGKNITPMapSGGLYSILSEYN-KNHTDKIQVNTIQEp-sNGDNLKMVSQQ 192 Staphylococcus ...
NP_390815    115 LFNKvAYNHFpLKITVLQNndtIRGIEDLKGKRVITSa-TSNGALVLKKWN-EDNGRPFEIAYEGQg--ANETANQLKSG 190 Bacillus subtil...
YP_001487569 114 LYPKvPYGYSmTGLIVNESdkeIRSLDDMTSKKLAPVspSGGLRSILNQYN-QEHDPDISLTTIESp-sNELNLKRVESG 191 Bacillus pumilu...
YP_817864    121 KFGSvGYTVWdTLLATKKStgvLNSFADAKGKKLYVTn-STNQATLTDAYLkKNPNAYSVVRGTYT---MEQVAQGINSN 196 Leuconostoc mes...
YP_766654    114 LIPEsPIGASlIKIYSRKDs-gINEMKDLVGKKIVPVtaGGGIYKFATAWQeKNPDFKIEITASSAgipYPDRLKEVENG 192 Rhizobium legum...
NP_390816    112 LYHKvPYNYSpMYITVKEDnhkIHTLKDLHGKTVIVGa-TSNAADYITKYN-KTHGSPIHLKYAGQg--SNDTANQIETG 187 Bacillus subtil...
AAK05035     114 YFSS-PLSKSnNAVLVKSGt--YKTLADLAGKSTIGNp-ASNYTKSIQDWNkANPDKEIKISYSADstsINTRFTQVESG 189 Lactococcus lac...
4EQ9_A        86 LYAA-PIAQNpNVLVVKKDdssIKSLDDIGGKSTEVVq-ATTSAKQLEAYNaEHTDNPTILNYTKAd--FQQIMVRLSDG 161 Streptococcus p...
Feature 1            # #                                                                         
2O1M_A       171 RADATIST-PFAVDFQNKTst-iKEKTVGn------VLSNAKVYFXFNKNEQ--TLSDDIDKALQEIIDDGTLKRLSLKW 240 Bacillus subtilis
YP_910119    220 TYDAVYLS-KAQYDGVADTlg-yKLKVTD-------PVDAAGTVILYNRKNG--DVQKAIDEQIDALIKDGTLGKISEKY 288 Bifidobacterium...
YP_300710    193 RRDAMLLN-WNTYKAIQSQvk-eDVKIGG-------IVKKEPLHIVYNKKHQ--QLHDDIDQATIELKKEGKLQALSKKY 261 Staphylococcus ...
NP_390815    191 RADATIST-PFAVDFQNKTs---TIKEKTvg----nVLSNAKVYFMFNKNEQ--TLSDDIDKALQEIIDDGTLKRLSLKW 260 Bacillus subtil...
YP_001487569 192 RSDAAFMN-ISTFDTIQKHl---NLKVKVg-----gIVSKEPIYLVLQPSEK--QLAEDLDRITQEMIDDGTLPKLAKKW 260 Bacillus pumilu...
YP_817864    197 QFNVYPAP-KYSIDLLNRQfk-tKLVYGK-------AVNHSNAYPMFNKKADp-KLVKAVNKAMEELKKDGTIKKLSNKW 266 Leuconostoc mes...
YP_766654    193 KYDALVLPsNLGEQTVIDQqk-lEVKASE-------PVAINNTFVLIHRSEEnkALSADIDKALKELKADGTLAKLSQKW 264 Rhizobium legum...
NP_390816    188 RADATIAT-PFAVDFQNKTha-fRQKTVGd------VLLDTEVYFMFNKGSQ--TLADDTDQAIKKLEKNGTLKKLSRKW 257 Bacillus subtil...
AAK05035     190 KIDFMLYD-KISLESAVKEqgfdNLKIEDismdtgdAEHDGYEYFLFGKDSQgkKLQKDVNGVLAKMQADGSLAKISKKY 268 Lactococcus lac...
4EQ9_A       162 QFDYKIFD-KIGVETVIKNqgldNLKVIEl-----pSDQQPYVYPLLAQGQD--ELKSFVDKRIKELYKDGTLEKLSKQF 233 Streptococcus p...
Feature 1              
2O1M_A       241 LGDDYS 246 Bacillus subtilis
YP_910119    289 FKQDNF 294 Bifidobacterium adolescentis ATCC 15703
YP_300710    262 FDINVF 267 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
NP_390815    261 LGDDYS 266 Bacillus subtilis subsp. subtilis str. 168
YP_001487569 261 FGVDFF 266 Bacillus pumilus SAFR-032
YP_817864    267 LKGDYV 272 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
YP_766654    265 FGEDIT 270 Rhizobium leguminosarum bv. viciae 3841
NP_390816    258 LGADYS 263 Bacillus subtilis subsp. subtilis str. 168
AAK05035     269 LGGDFV 274 Lactococcus lactis subsp. lactis
4EQ9_A       234 FGDTYL 239 Streptococcus pneumoniae str. Canada MDR_19A

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