Conserved Protein Domain Family
AcaB

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pfam08900: AcaB 
Transcriptional regulator AcaB
This family of proteins is found in the IncC family of broad-host-range plasmids which enables the spread of antibiotic resistance genes among human enteric pathogens. Recently, AcaB member has been characterized as a transcriptional regulator that plays a crucial role in the regulation of IncC conjugation. It is a DNA binding protein which binds upstream of the acaDB promoter to increase its transcription and, in turn, acaDB activates the transcription of IncC conjugation genes. Structurally, AcaB consists of two helical hairpins in tandem which assemble into an anti-parallel four-helix bundle to form a two-stranded antiparallel beta-sheet positioned parallel to the helices. This is structurally similar to bacterial transcription factors from the ribbon-helix-helix (RHH) superfamily.
Statistics
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PSSM-Id: 430300
Aligned: 16 rows
Threshold Bit Score: 233.326
Created: 23-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5P8P1                 319 DLGALVDDGvdTMTLHTKEGFRMFMGRRRDPAg-----qYNAIPGGKRVASSLKALWTLSRNNNPYADWALLRADHRIPE 393 Aroma...
WP_014704089            20 VPGALQGEV--WLTIQTYQAQSLIRGRRAADG-------KPAIMGLIGFADRLKSLWQAVRFDDPYADWWLLKVEEGVAD 90  Methy...
jgi:Metme_1936          24 QPGDLRSET--RMTIQTRQAQKLVVGRKSADH-------IEPIIGLLDFGRRMKLIWLSAEADDPFADWFLVKIEQSLTE 94 
PRJNA210423:M911_07845  33 SPGGLRSEV--VLQIQTRQAQRLVLGRAAGPD-------KPAIIGLVRFGMIVRRIWDSAARDDPYADAALLRILEALEQ 103
jgi:Aave_2682          106 aigGLVDDGldQMTIHTIEAYRMFLGRSRDAAn-----rINPIIGGKRVASCLRNLWMLTGNDNPYAEWALLRHEHGVNE 180
CBL47135                56 RPGPIVPKA--TIRLHTNIAHQLFFGRAPDPNr------PFRDQCFASFANNLSALWTFAQADDPYADAKLILIEEQIKA 127
BAN98960                11 KPGGLTSSL--KIEIHSNYAIRLWEGRPQAQAkegvkkvKHAIMSMPQAIKRSGIIYQDSLADNPWADEAMFRVETLLNE 88 
CBV43918                 8 QMGALRSKI--RMTLHTYQATRLWHGRGVESG-------KPQIIGMRQLLAMIGKIQRDAAQDDPYADYWLIQIEEKLRE 78 
jgi:Tgr7_2818            9 NLGSLRSAM--ALTLHTHHASRIWHGRTPAEG-------RPGIIGLNGFISIMNKLKRGAEQDDPYSDWWMLRIEEKIAD 79 
jgi:HSM_1747             8 QLGPLRSEI--TFTLHTQYAHKLWVGRPMIRNeeg-kvtQSSIISVPNCFAMLTQIQRAASEDDPYADDYLIQFEESVIN 84 
Q5P8P1                 394 LRRGLDQQAQAFDAEIRKrADKGLGFAILKSRQPKVLELGFRSPYGYAIAELIVEFDYYVRVVKTLGRKAIFSDKQVHDA 473 Aroma...
WP_014704089            91 IRAQLQGLQQRMDALITE-SNSALEFSVAQSSRPQRVSLQFANPYAFRAAQLLGEYDRLMCADMTLHYLGLDMPTDLIEQ 169 Methy...
jgi:Metme_1936          95 SQAMIQAKTDWLNARLGE--IRGFEIQVAQSLQPLQVPIYFQNPYGYMGAYLIADYDALASSVFTARHIALIDRAVAEQL 172
PRJNA210423:M911_07845 104 GREDVNQLQQRVQGQLDG--VDGIAIGLAQTLTPVRIPLNFANPYGYMGAYLICDFDRLARTLLTARHVGMLDRDTSERM 181
jgi:Aave_2682          181 VHKHLQAEIAKAEDMLDQqRKRGLVLAVLSSSSPMTVNLGFRSPYGYAISMLMVDYDHYVRLQKTLQRKNLLSDDEVRGS 260
CBL47135               128 AREQIGDLTELLNELVESlQTSGIRIDAHQSTRPIDVPIAFRAVHAAVAIQLLGAVDSAIQKALLARHFGLISGQDWQRV 207
BAN98960                89 AGEHIKSRVEELEVILKS-VPPAVSFSDIASSSPLNIGVYSRSPLGYRCVWVLVGYDQMALKAFQAAHYGLISRNRRDEL 167
CBV43918                79 NRQYLNDQLHLAEQRLAQ-LPEGLTVEENISQQPFTTPIYTGGQLGWLAIRQLLDYDRLVRQVLLAGHIAQMSPGAEQNI 157
jgi:Tgr7_2818           80 TKTRLQTLREQVDQALAD-VPPALSLGENLNVQPVKLPLFVNSQLGFMAVYLLADYDDLARRLILAHHTALIDRSTLERW 158
jgi:HSM_1747            85 YRKEIQKLTNDIVTLYAKmLPEGISIERCANISPISYPIYVNSQLGYQLLYLLGDFDSLCRSVMTAAHIAIINRAEAQDW 164
Q5P8P1                 474 IRQFTRPMRAAFEEFI--R-FETwlskpellpLSRTDFLPGADAAaqRRVAavtGIFG-PVPSGIYAGHQGSRHSQ 545 Aromatole...
WP_014704089           170 VSGSGRWVRRVFALPQgyH-CLD---------VRRSDIRQGTPAA--IKAR---ERMG-EIPQDILNGERLPSLRP 229 Methyloph...
jgi:Metme_1936         173 LQVTGKAIRRTFNLAGqwK-FTG---------VTREDVLAQTSNA--LRAS---GLLG-VCPEPILSKTQRAKISP 232
PRJNA210423:M911_07845 182 LYQGGRKVRRAFAAAQawK-HCA---------VTRADLLADNARA--RSAI---EAMG-TLPPDVIQGETRPRIAP 241
jgi:Aave_2682          261 LRKAQRAILNVFYGTA--R-FDRwlsrpeiraLNRGDWISSAEDAa-KRLQfavSTFG-PVPASVYKATISPSHSr 331
CBL47135               208 LANSATPMRHLFKLALf-R-ASG---------ATRADFALNNDRA--KVAV---EKLG-ELPADILAGVRRPLLGP 266
BAN98960               168 LSHCAHLIRKVYGVLRlyR-TVK---------VNRADIAIQTKEA--QQAI---EKLG-MPDTDILTGKKRSSFSP 227
CBV43918               158 LRGVHRKMHSLCDFPKryPgYSG---------ITRDDLAANNARA--RQAI---EKRG-ELPEDVAQGKRRSKYAP 218
jgi:Tgr7_2818          159 LNDGAHALRSLFSLAQqyR-YSG---------TTRDDFAAKNAAA--RAAL---EKFG-ELPTDVLEGTRRSRFAP 218
jgi:HSM_1747           165 IEAGARLIRKCFGIVEryK-SSG---------ITRRDYQEKNARY--QAAI---KRMGyTLSDAVLTGEHRAEFAP 225
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