1EP3,1EP2


Conserved Protein Domain Family
DHOD_1B_like

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cd04740: DHOD_1B_like 
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Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Statistics
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PSSM-Id: 240091
Aligned: 45 rows
Threshold Bit Score: 314.102
Created: 26-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1EP2; Lactococcus lactis DHODB binds FMN and orotate

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    #                        #       
1EP3_A      8 SVKLPGLDLK-----NPIIPASGCfg-fGEEYAKYYDlnklGSIMVKATTLHPRFGNPTPRVAETA--SGMLNAIGLQNP 79  Lactococcus lactis
1EP2_A      8 SVKLPGLDLK-----NPIIPASGCfg-fGEEYAKYYDlnklGSIMVKATTLHPRFGNPTPRVAETA--SGMLNAIGLQNP 79  Lactococcus lactis
CAB57690    1 MITIKNITLN-----DPLIIASGIipdvPNYVETICEkykpSAITTKTVTLNPLEPHKPPTVIKLHd-GIYMNAIGLGNP 74  Sulfolobus solfata...
CAC11547    5 STSVAGIRLE-----NPLMLASGIldenGYTMLDVMNng-aAAVVTKSIGMEERNGYSAPVIVEYG--DSLINAVGLSNP 76  Thermoplasma acido...
NP_069579   5 ETEIGGLRMK-----NPLMLASGIm--gSKVHSLNLIardaGAVVTKSVGVEEREGYRNPTVVNWK--CGLINAVGLASP 75  Archaeoglobus fulg...
NP_613848   3 PVEVLGKRWA-----HPIACASGAla-aHRPGMENAVlrgaAAIFTKTVTESPREGHPGPVFVDYLdeGYALNAMGLPNP 76  Methanopyrus kandl...
NP_971592  10 KIKNAGLAARegrsaPVLATVSGVlstkPNLIRYCADelgfGLVTTKSFQVLPNPGNREPILCEPEl-GCFGNSVGLRNC 88  Treponema denticol...
EAM94067    3 LKPDIGIGAA-----NPFILASGIldanGYTIKRILEng-aGAAVTKSIGSEERKGFDPPVIYSDG--RSVINAIGLSNP 74  Ferroplasma acidar...
YP_256198   1 MIQVAGVNFE-----DPIVIASGIvpptKEYMQNVCEkyepSAITSKTLTYSPLEPHRSPTFVKISd-NCYLNAIGLGNP 74  Sulfolobus acidoca...
CAJ74951    7 SINLCSMRLS-----NPTVLASGIlgttKTLLKRVAEsg-aGAVTIKSVSKDSREGHHNPTVITYE--AGMLNAVGYSNP 78  Candidatus Kueneni...
Feature 1                                                          #  #                       
1EP3_A     80 GlEVIMTEKLpwlnenfpelpIIANVAgseeADYVAVCAKIgdaa-nvkAIELNISCPNvkhg-gqaFGTDP-EVAAALV 156 Lactococcus lactis
1EP2_A     80 GlEVIMTEKLpwlnenfpelpIIANVAgseeADYVAVCAKIgdaa-nvkAIELNISCPNvkhg-gqaFGTDP-EVAAALV 156 Lactococcus lactis
CAB57690   75 G-AKAINEIGvl-------cpLIVSVGgssiNEIKEVVEVVqsk---akIIEINVSSPNrk-----gYGESLsKLIGDII 138 Sulfolobus solfata...
CAC11547   77 GiDNFAEEIRiakr---sgkpVIGSVFasdaESFVNLGRKMqey--gcdAVELNLSCPHvkgf-gleVGSDP-DLVEDIV 149 Thermoplasma acido...
NP_069579  76 AaKDFAEELKdytn----eapLLISLYghsvEEFSDLVDTFdsalpylhGYELNLSCPHvkga-gldIGMDL-ELSAAIV 149 Archaeoglobus fulg...
NP_613848  77 GpDRMVVEIEefrde--fdvpVYASVAadgpEGFKRLARAFsgv---adGLELNVSCPHagkgygaeLGSDP-EAVAEIT 150 Methanopyrus kandl...
NP_971592  89 GmEQAVKELKelrsswktdsiLNVSLSasnpEDFISLLKGFeel---adCFELNFSCPHasagfgasIGCDP-AIAAEYV 164 Treponema denticol...
EAM94067   75 GiENYGQEIKiats---sgkpVIGSIFgqtpEEFAMLAEKMqay--gasAVELNLSCPHvkgy-gteIGSDP-ELVSAIV 147 Ferroplasma acidar...
YP_256198  75 G-IQILRDLGeik------ckLIISIGgsnvNEYIDAVSKIndi---pvMIELNVSSPNrr-----gFGESNlTYVEEIV 139 Sulfolobus acidoca...
CAJ74951   79 GvEAARIEYSnlne---igvpVIASIIgtctDDFIEVAEGLsas--gfsAIEIPLSCPHtpgfgllsGQGTP-KATYEIT 152 Candidatus Kueneni...
Feature 1                     #                           ###                           #     
1EP3_A    157 KACKavs---kvPLYVKLSPNVt--dIVPIAKAVEaagADGLTMINTLM-GVRFDLkTRQPILAni---tGGLSGPaiKP 227 Lactococcus lactis
1EP2_A    157 KACKavs---kvPLYVKLSPNVt--dIVPIAKAVEaagADGLTMINTLM-GVRFDLkTRQPILAni---tGGLSGPaiKP 227 Lactococcus lactis
CAB57690  139 ESVKsvt---klPVFVKLGPWDn---VIELAGKALekgADGLTLINTIK-GLIIDVeTFKPILYyg---tGGVSGRclYP 208 Sulfolobus solfata...
CAC11547  150 NEMKski---svPVFAKLSPNVs--dIIEIAKAAEk--ADAYVLINTVK-AMKIDIrARMPVLTna---yGGLSGPaiKP 218 Thermoplasma acido...
NP_069579 150 EELKgkt---knPVFAKLSAMHd---YLKLAKVLEdagVDGITISNTLR-GMKIDImSGKPVLSnl---sGGVSGPaiKP 219 Archaeoglobus fulg...
NP_613848 151 EAAVraf---dgPVSVKLTPNVdretLLEVAAAAIdagAEALTAVNTLGpGLRIDLrTASPVLGag---vGGLSGPalKP 224 Methanopyrus kandl...
NP_971592 165 KIIKkalpdcavPIFVKLTPNVe--dIGAIASAVIeagADGITAINTVGpKVYIEPhSGKPILQnklggkGGMSGAwvFP 242 Treponema denticol...
EAM94067  148 SAVKsri---niPVYAKLSPNTs--dMLGQAIAAGk--ADGYVLINTIK-AMKIDInTGKAVLSni---yGGLSGKsiKP 216 Ferroplasma acidar...
YP_256198 140 KNVKsiv---kkPVFVKLGPWDn---IVEIAGRALsagADGLTLINTLK-GMLIDVeDFKPILSyg---tGGISGKciHA 209 Sulfolobus acidoca...
CAJ74951  153 YAVRrkt---nvPIFVKISPNVp--eITSIAKAAEdagANGITAVNSMGpGMVINIeSKKPVLGfk---vGGVTGDalRP 224 Candidatus Kueneni...
Feature 1                            #                    ##                                  
1EP3_A    228 VALKLIHQVAQDv--dIPIIGMGGVanAQDVLEMYMAGASAVAVGTANFA-DPFVCPKIIDKLpelmdqyrieslesLIQ 304 Lactococcus lactis
1EP2_A    228 VALKLIHQVAQDv--dIPIIGMGGVanAQDVLEMYMAGASAVAVGTANFA-DPFVCPKIIDKLpelmdqyrieslesLIQ 304 Lactococcus lactis
CAB57690  209 IALRIIKDVYEEy--gVDIIGVGGVydWTDVIGMLAAGAKLVGLGTVLIEkGFSVIEEIRKGLqsyllek-glkfedIIG 285 Sulfolobus solfata...
CAC11547  219 VGVRYVYEVKKEt--gKDIIGVGGIttYEDAVEYIMAGASAVQIGTALYTvGKSVFRNIISQMntfmddekfhsiqdMVG 296 Thermoplasma acido...
NP_069579 220 IALKCVYDLYKEi--eVPIVGCGGItsFEDVLEFIMAGARAVQIGSAVYY-SRRIFYSLKESLiaftrar-dctisdLIG 295 Archaeoglobus fulg...
NP_613848 225 IALRVVADLALEfgeeVEIIGVGGIrnGEDVVEFLFAGAKAVQVATAAREkDFGDIAMETSHIlkelgydgpeeaigAAL 304 Methanopyrus kandl...
NP_971592 243 RALECIGQIRKAvgeeIPIIGMGGVmtGAQAAELVRAGADIIGIGSACGMlEQDDLKPFFQNLasda-------lncIRG 315 Treponema denticol...
EAM94067  217 VGIRYVYEVKKEt--gKTIIGVGGInnFEDALEYIMAGASAVQIGSAISQaGIGIFANLTKELesymeansidnieeLVG 294 Ferroplasma acidar...
YP_256198 210 LAVRVIHDVFKEy--ePEIIGVGGVfdWRDAIELISVGAKLVGLGTVLVEkGFDVIREIREGIgtyleek-glkveeIRG 286 Sulfolobus acidoca...
CAJ74951  225 IAVRCVYDVYQAv--kIPIIGVGGIstGRHAIEMMMAGASAVGIGTGVYTrGINVFSKVCAEMkqwmiengyntineLVG 302 Candidatus Kueneni...
Feature 1       
1EP3_A    305 EV 306 Lactococcus lactis
1EP2_A    305 EV 306 Lactococcus lactis
CAB57690  286 IS 287 Sulfolobus solfataricus
CAC11547  297 VA 298 Thermoplasma acidophilum
NP_069579 296 IA 297 Archaeoglobus fulgidus DSM 4304
NP_613848 305 PE 306 Methanopyrus kandleri AV19
NP_971592 316 KE 317 Treponema denticola ATCC 35405
EAM94067  295 VA 296 Ferroplasma acidarmanus Fer1
YP_256198 287 IG 288 Sulfolobus acidocaldarius DSM 639
CAJ74951  303 VA 304 Candidatus Kuenenia stuttgartiensis

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