1G6S,1RF5,1RF6


Conserved Protein Domain Family
EPSP_synthase

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cd01556: EPSP_synthase 
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EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form 5-enolpyruvylshkimate-3-phosphate (EPSP), an intermediate in the shikimate pathway leading to aromatic amino acid biosynthesis. The reaction is phosphoenolpyruvate + 3-phosphoshikimate = phosphate + 5-O-(1-carboxyvinyl)-3-phosphoshikimate. It is found in bacteria and plants but not animals. The enzyme is the target of the widely used herbicide glyphosate, which has been shown to occupy the active site. In bacteria and plants, it is a single domain protein, while in fungi, the domain is found as part of a multidomain protein with functions that are all part of the shikimate pathway.
Statistics
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PSSM-Id: 238797
Aligned: 103 rows
Threshold Bit Score: 315.266
Created: 7-Jul-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
active sitehinge
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1G6S_A contacts with substrates shikimate-3-phosphate and glyphosate
  • Structure:1RF6_A contacts with substrates shikimate-3-phosphate and glyphosate
  • Citation:PMID 1939260

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                          ##   #                                                       
1G6S_A       12 VDGT---------INLPGSKSVSNRALLLAALahGKTVLTNLLDSDDVRHMLNALTAL--GVSYTLsad---rtRCEIIG 77  Escherichia coli
NP_972290     3 LKIKkskpvspmpIEVPPSKSHSMRALVLATFaeGPSQIKNLLMSGDTKTAVSVFESLgvKFKIEQkn----isSADIIV 78  Treponema dentic...
Q822G0       11 ISGS---------VDVPPSKSHTLRAIFWASLsrGTSTINNPLESPDSEAMIQACKQL--GAKIYKks-----sSLEITG 74  Chlamydophila ca...
Q96Y91       10 IYGK---------VKAPQSKSFGIRLVLYSLL--KESKLDNLIPSDDVNVAINVVKQL--GVSVEGtyf---krEKELVT 73  Sulfolobus tokodaii
Q980I5       10 ISGI---------IKAPQSKSLAIRLIFLSLF--TRVYLHNLVLSEDVIDAIKSVRAL--GVKVKNnsefippeKLEIKE 76  Sulfolobus solfa...
ZP_00307146  10 ISGT---------IYAPSSKSYTQRYVLYSAFsnKPVKIKNVSFSEDEMVSLKIAESC--NATINYnr-----kDIEIKP 73  Ferroplasma acid...
Q9Z6M0       11 VYGN---------AFIPSSKSHTLRAILWASVaeGKSIIYNYLDSPDTEAMICACKQM--GASIKKfp-----qILEIVG 74  Chlamydophila pn...
Q978S3        8 LGGSg-------iAEMPSSKSFTQRYVLASAFlnKSVVLNGITITNDDDVAMRIAESV--GSTITInn-----rSIKISS 73  Thermoplasma vol...
YP_023380     5 ISGEfrp----gvINAPSSKSFSQRYILYSAFsnIPVTLKNVSFSDDERIALEIARAC--GADIEFn------dSLTIKP 72  Picrophilus torr...
O84371       15 PYGE---------IAVPPSKSHSLRAILFASLskGTSIIENCLFSPDSQAMLTACEKM--GAHVRRig-----dSLHIQG 78  Chlamydia tracho...
Feature 1                             # ##                                    #                 
1G6S_A       78 nggplhae------galelflgNAGTAMRPLAAALClg-------sNDIVltgep---rmkeRPIGHLVDALRLG----- 136 Escherichia coli
NP_972290    79 fppkeglkkriekqkqikidagNSGTLFYFLGSILSlmssd-filtGDSSil---------kRPAKPLIEIYEEL----- 143 Treponema dentic...
Q822G0       75 tphlrlpk-------diaidagSSGIVFRFFTALAA----------IFSEkvtitgssqlqrRPIAPLIRALENF----- 132 Chlamydophila ca...
Q96Y91       74 pkfl---------------yfgGSATTLRMSIPILSvl-------gVDTIidgde---tlrkRPLNAIIKALEGSvsfs- 127 Sulfolobus tokodaii
Q980I5       77 rfi----------------klkGSATTLRMLIPILAai-------gGEVTidade---slrrRPLNRIVQALSNY----- 125 Sulfolobus solfa...
ZP_00307146  74 dfkcpd-----------siyvgESGTSYRLSIGLLVar-------kCKTTikgeq---qlagRPVEPLIKALSDA----- 127 Ferroplasma acid...
Q9Z6M0       75 nplaifpk-------ytlidagNSGIVLRFMTALACvf-------sKEITvtgss---qlqrRPMAPLLQALRNF----- 132 Chlamydophila pn...
Q978S3       74 nfkcpe-----------eiyvgESGTSYRLSIGLLAasgcvtrikgEDSLa----------kRPIEPLLMALGEN----- 127 Thermoplasma vol...
YP_023380    73 dfrcpd-----------einagESGTSLRLATGLLAarr-----ckTFIHeeas-----llkRPLDDLIKTLSEKnvvfn 131 Picrophilus torr...
O84371       79 npdphhch-------pryfhmgNSGIALRFLTALSTls-------pTPTLitgsh---tlkrRPIAPLLSSLKQL----- 136 Chlamydia tracho...
Feature 1                                                    ###                            #  #
1G6S_A      137 ----GAKITyleqenypplrlqggftggNVDVDGs---------vSSQFLTALLMTAPLAp---eDTVIrikgdlvSKPY 200 Escherichia coli
NP_972290   144 ----GLKYEfldgfeka----pirvlpgSSSIKNlkgktlclegdFSQVVSGLLLGAGLLd---fPLQInlk-ragELPY 211 Treponema dentic...
Q822G0      133 ----GATFSyqrdpytlpfsvlgpissgYTEVLGe----------DSQYASALAMACSLAe---gPFSFtii-npkERPW 194 Chlamydophila ca...
Q96Y91      128 ssllPTKISgkl-------------kenFVRIEGg---------eSSQYISGFIYAFSLVgg--gEIEIipp--isSKSY 181 Sulfolobus tokodaii
Q980I5      126 ----GISFSsyslplti----tgklssnEIKISGd---------eSSQYISGLIYALHILng--gSIEIlpp--isSKSY 184 Sulfolobus solfa...
ZP_00307146 128 ----GTNFKkhkdgfymv--dgrnsastGVSIDGg---------tSSQFVSAMLYYYSILge--gNFTVsn---mvSANY 187 Ferroplasma acid...
Q9Z6M0      133 ----GASFHfssdksvlpftmsgplrsaYSDVEGs----------DSQFASALAVACSLAe---gPCSFtii-epkERPW 194 Chlamydophila pn...
Q978S3      128 ----GVKFErneagfynv--dgrnsqkkHVEIEGs----------SSQFVSSLMLYYAKKgggefTARNi-----kSIGY 186 Thermoplasma vol...
YP_023380   132 nldnGIMIDasns------------ipsDSIIDGg---------rSSQFVSSMMMYHSLTs---gSLKAln---ivSNDY 184 Picrophilus torr...
O84371      137 ----GAHIRqktsssipf-tihgplspgHVTISGq----------DSQYASALAITAALAp---yPLSFsie-nlkERPW 197 Chlamydia tracho...
Feature 1                                                                                       
1G6S_A      201 IDITLNLMKTF--GVEIEnqhyqqFVVKGg--qSYQSpg-tYLVEGDA----SSASYFLAAAAIKg----gTVKVTGIgr 267 Escherichia coli
NP_972290   212 LKMTLHWLKTC--GIKFDvsd-dfKTFKIiesqKILGf--sAGIPADW----SSAAFPIALALITa----sTISIKNIdi 278 Treponema dentic...
Q822G0      195 FKLTLWWLEQL--AIPYSqseentYSFVG----KSRPegfsYTVGGDF----SSAAFLAVAALLSqsphptYLRNLNMqd 264 Chlamydophila ca...
Q96Y91      182 IYLTIELLNSL--GGNIKmkgnkiYVEKG----DFKPy--iGKVPGDY----ALASFYASSSIVSg----gEIVIEDVye 245 Sulfolobus tokodaii
Q980I5      185 ILLTIDLFKRF--GSDVKfyg-skIHVNPn---NLVEf--qGEVAGDY----GLASFYALSALVSg----gGITITNLwe 248 Sulfolobus solfa...
ZP_00307146 188 VNITINCLRNF--GITVHnng-nnYSIENg---DYAVk--eIGIEGDY----SSASYFIVLGIFTg-----NIKIKNLgi 250 Ferroplasma acid...
Q9Z6M0      195 FDLSLWWLEKL--HLPYScsd-ttYSFPGs---SHPQgf-sYHVTGDF----SSAAFIAAAALLSks--lqPIRLRNLdi 261 Chlamydophila pn...
Q978S3      187 VYITKRVLYDLgyFANIErt--itINPTG----VWKTa---IDVEPDY----SSMAFFMVLGLLSdsv-dvRFRIKRIsr 252 Thermoplasma vol...
YP_023380   185 IKITIKTLNDF--GISVYss--ngFFEFG----KTLMkgnkICIEGDY----SSAAFWIVLGLFKg-----DIEIKNLks 247 Picrophilus torr...
O84371      198 FDLTLDWLHSL--NISFLrdq-dsLTFPGg--qSLESf--sYSVPGDYssaaFLASFGLLSSSSKp----tILRNLSSqd 266 Chlamydia tracho...
Feature 1                                                            #                        # 
1G6S_A      268 nsm-qgdirFADVLEKM---GATICWGd---dYISCTRg-eLNAIDMDMNhiPDAAMTIATAALFAKG-TTTLRn-iYNW 337 Escherichia coli
NP_972290   279 ndv-qgdarIVKVLKEM---NADIRFEeksqtLKIFPSs--LKGGTFDCSdiPDAVPALSAIACFAKG-ETILKn--IEI 349 Treponema dentic...
Q822G0      265 vq---gdkeLFVLLKKL---GANIVFEn---dIVIIFPs-tISGGNIDMDpfIDALPILAVLCCFATS-PSHLYn-aRGA 332 Chlamydophila ca...
Q96Y91      246 lpnfdgdhsIVNFYKMM---GAESYVKd---nKWIVKSsekLNGIEVNVDdyPDLAPSIASLAPFSSS-PTIIKg-iKRL 317 Sulfolobus tokodaii
Q980I5      249 pkeyfgdhsIVKIFSEM---GASSEYKdg-rwFVKAKDk--YSPIKIDIDdaPDLAMTIAGLSAIAEG-TSEIIg-iERL 320 Sulfolobus solfa...
ZP_00307146 251 ds----lqpDRQIIELLn--NATECIKig-gnELTVDKanfIKGIIVDASatPDIAPVISVIGIFSTE-GVKIYn-yQRL 321 Ferroplasma acid...
Q9Z6M0      262 ld----iqgDKIFFSLMqnlGASIQYDne--eILVFPSsfsGGSIDMDGC--IDALPILTVLCCFADS-PSHLYn-aRSA 331 Chlamydophila pn...
Q978S3      253 -------iqPDSVILDLf--KNNILINge--eIRVISGinePVSVDADMN--PDLCPPLSVIGIFSKY-GVQIRn-yERL 317 Thermoplasma vol...
YP_023380   248 dsc-qpdaaIINIINGIs--ERKIDIYn---nKIVVHKtrfLGDLYIDVDknPDLAPPLSIIGIFSDVaVHILNyrrLEI 321 Picrophilus torr...
O84371      267 sq---gdklLFSLLKQL---GAHILIGk---hHIEMHPs-sFSGGEIDMDpfIDALPILAVLCCFAKN-PSRLYn-aLGA 334 Chlamydia tracho...
Feature 1          ##  #                                              ##                        
1G6S_A      338 r-vKETDRLFAMATELRKV--GAEVEEGHDYIRITPpe----kLNFAEIAtyndHRMAMCFSLval-----sdTPVTILD 405 Escherichia coli
NP_972290   350 cryKECDRLSVISSELKKL--GADITEGRDVLHIIGnagknlsPASVDSHk--dHRIAMMLTIigfgiddkdgTVFTLKN 425 Treponema dentic...
Q822G0      333 k-dKESDRIVAITEELQKM--GACIQPCHDGLLINPsp---lyGASMFSHn--dHRIAMALSIaam----hasGDSSISD 400 Chlamydophila ca...
Q96Y91      318 k-tKESNRVVTISETLSKF--GVKVEYDEDKIVIYPsev--kaGHVICPNd---HRIAMLASVls------fkSGGTIEK 383 Sulfolobus tokodaii
Q980I5      321 r-iKESDRIESIRKILGLY--GVGSEVKYNSILIFGink--gmLNSPVTDclndHRVAMMSSAla------lvNGGVITS 389 Sulfolobus solfa...
ZP_00307146 322 k-tKESDRWKGIIEMCRAF--GATVSVCENFIEIKKgi----lKDPESIKft-dHRMIMSAIIagv----iagSHTEFKN 389 Ferroplasma acid...
Q9Z6M0      332 k-dKESDRILAITEELQKM--GACIQPTHDGLLVNPsp---lyGAVLDSHd--dHRIAMALTIaal----yasGDSRIHN 399 Chlamydophila pn...
Q978S3      318 k-tKESNRYEGIIDLAERF--GANVEDNGQDLFIKPgs---vrFPDVISYk--dHRMIMAASIasl----iggFPTVIEN 385 Thermoplasma vol...
YP_023380   322 ---KESNREENIISMARSF--GALIEKNDNEMVIRRgk----iSLPERISfs-dHRMIMSSIIagl----issGDILYEN 387 Picrophilus torr...
O84371      335 ---KDKESNRIEAIAHELQkmGGSVHPTRDGLYIEPsr---lhGAVVDSHn--dHRIAMALAVagvh---assGQTLLCN 403 Chlamydia tracho...
Feature 1            #                   
1G6S_A      406 PKCTAKTFP-------DYFEQLARI 423 Escherichia coli
NP_972290   426 AECFDISYP-------SFLEDLKRM 443 Treponema denticola ATCC 35405
Q822G0      401 TECVKKTFP-------NFIQILNSL 418 Chlamydophila caviae
Q96Y91      384 AECVNKSNP-------NFWKDLISL 401 Sulfolobus tokodaii
Q980I5      390 AECVGKSNP-------NYWQDLLSL 407 Sulfolobus solfataricus
ZP_00307146 390 AEKINKSYP-------EFLVDLKRL 407 Ferroplasma acidarmanus
Q9Z6M0      400 TACVRKTFP-------NFVQTLNIM 417 Chlamydophila pneumoniae
Q978S3      386 AEKTAKSFP-------GFFAELSKF 403 Thermoplasma volcanium
YP_023380   388 IENINKSYP-------GFLNDLSNL 405 Picrophilus torridus DSM 9790
O84371      404 TQCINKSFPyfviaaqTLHANVRHY 428 Chlamydia trachomatis

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