Conserved Protein Domain Family
recD_rel

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TIGR01448: recD_rel 
helicase, putative, RecD/TraA family
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 273632
Aligned: 5 rows
Threshold Bit Score: 980.425
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_031920285  12 IKGTVEAILFQNSDNFYTVLKVDTIETNEDfd--tMPTVVG--FLPNIVEGDVYTFKGQVVDHPRYGKQLKAETFEKe-- 85  Staphylococcus ...
WP_010230095   7 LSGTLELILPEDSLSNQMGYAFLRVPYKNS-----LVTICGnsSLSLFKIGASVDLTGYWSVDASGALVFRFTTAKT--- 78  Chlamydia murid...
WP_011714925  15 FCGRIKQVVFHNLENGYAVMVVRPDEAPEEt-----QTVVG--VLAAPAAEMRLCFHGQWESNAKFGRQFKAERMEPl-- 85  Magnetococcus m...
WP_000454479   5 FSGTIERIIFENPSNFYRILLLEIDDTDAEdfddfEIIVTG--TMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRa-- 80  Streptococcus p...
WP_010888537  12 VSGGVNKVRFRSDTGFTVMSATLRNEQGEDp----DATVIG--VMPPLDVGDTFSAEVLMEEHREYGYQYRVVNMVLeam 85  Deinococcus rad...
WP_031920285  86 -mPQTKEAIISYLSSdLFKGVGKKTAQNIVNTLGDNAINDILDDHSVLEKVSGLSKKKQKQIAEQISANQESEKIMIRLH 164 Staphylococcus ...
WP_010230095  79 --YSPSLGIIAYLTS-QIKGVGPKLAQKIIATFGEETLSVLDSCPSKLVEVDGISLARCEDFSRQLHEQKDLRNALLFLQ 155 Chlamydia murid...
WP_011714925  86 -gTTLREAIVLFLQSgSIKGIGKTMANRLVERFGEALFEVMDERPEALLEVRGVGKANHGRILKNWQKARDDAQLMLLLY 164 Magnetococcus m...
WP_000454479  81 -kPTSK-GLVKYFSSsHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMILAKLA 158 Streptococcus p...
WP_010888537  86 paDLSEEGVAAYFEAr-VGGVGKVLAGRIAKTFGAAAFDLLEDDPQKFLQVPGITESTLHKMVSSWSQQGLERRLLAGLQ 164 Deinococcus rad...
WP_031920285 165 DLGFGPKLSMAIYQFY-----LGDTLTILDRNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECiKQ 239 Staphylococcus ...
WP_010230095 156 RHGIAIHYGLRLYKKY-----QNQTIDKVCQDPFLLAKEMYGVGFKTADLIASCLGVPLNSPNRIVAGIQYSLDELQ-EE 229 Chlamydia murid...
WP_011714925 165 QLGFGAALTRAVSKCLreadpQADPLKMVQENPYLLAQ-VRGITFQRADAAALQLGMQRLDPRRIEAGMQEILIQLAnNE 243 Magnetococcus m...
WP_000454479 159 NYGIPNKLAFQIQDFY-----KEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACmET 233 Streptococcus p...
WP_010888537 165 GLGLTINQAQRAVKHF-----GADALDRLEKDLFTLTE-VEGIGFLTADKLWQARGGALDDPRRLTAAAVYALQLAGtQA 238 Deinococcus rad...
WP_031920285 240 GHTYLPINVVIDLTVDVLNYQ--DEEVIEPEKLDEMLQYLN----EEKRLIID-----NE-----QVAIPSLYYSEIKSV 303 Staphylococcus ...
WP_010230095 230 GHTCYPLNDFIVLVEKLLNEDt-PEKIVRKEEILTQVHFLSrqkaVYIKELEQ-----DS-----YIWSRQLFLAEQQIA 298 Chlamydia murid...
WP_011714925 244 GHTLLEEPRFHQQLTVLLALQg-HQDQLNLVPMVLERLDLG-----QGPLVRV-----YGrdgspFVQLTRYHDYEKQIA 312 Magnetococcus m...
WP_000454479 234 GDTYVEARDLLEQTLTLLESS--RPVELDPSQVAQELSYLI----EEDKVQQI-----DT-----KIFDNSLFFAEEGIR 297 Streptococcus p...
WP_010888537 239 GHSFLPRSRAEKGVVHYTRVTpgQARLAVETAVELGRLSED----DSPLFAAEaaatgEG-----RIYLPHVLRAEKKLA 309 Deinococcus rad...
WP_031920285 304 QNLFRIKTHTNKLTEIEQsdlQMHIGEIEDANQVNYAASQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGL 383 Staphylococcus ...
WP_010230095 299 IDIRRLLFSSKRIQPINT---QEAILEVENLLDLKLEDKQKEALYASSSQKIHIISGGPGTGKSTITRAILSIFEKISSP 375 Chlamydia murid...
WP_011714925 313 YHISRLHGPSP-IETISD---G--WIERVSRGHFSLSVDQRQALKTITQDKVAILTGGPGMGKTTITRYVIEHAVENK-- 384 Magnetococcus m...
WP_000454479 298 SHLVRILEKGK-QKSHDLetiQKHITTVEQELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGL 376 Streptococcus p...
WP_010888537 310 SLIRTLLATPPADGAGND---D---WAVPKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLG-- 381 Deinococcus rad...
WP_031920285 384 sldyddyvnddYPVVLAAPTGRASKRLQESTGLEAMTIHRLIGWNQDTKPED-ILENEINARLIIIDEMSMVDTWLFHQF 462 Staphylococcus ...
WP_010230095 376 -----------QKIILAAPTGKAAKRMTEITGKRTQTIHSLLQYDFKTLSFRkNHEDPIDCDLVIIDESGMIDTILLQRF 444 Chlamydia murid...
WP_011714925 385 -----------QTVKLCAPTGRAAKQLAEATGEVALTIHRLMGKGSDESVDG---QRKFECDLLVVDESSMMDEWMASSL 450 Magnetococcus m...
WP_000454479 377 dfrk----ksnLPILLAAPTGRAARRMNELTGLPSATIHRHLGMTGDD-DTS-HLEDYLDADFIIVDEFSMVDTWLANQL 450 Streptococcus p...
WP_010888537 382 -----------LEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHN-HLE-PAPYDLLIVDEVSMMGDALMLSL 448 Deinococcus rad...
WP_031920285 463 LSAVPLDAQLIFVGDEDQLPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQk---------IDITQ 533 Staphylococcus ...
WP_010230095 445 LAALPDHAILILIGDVHQLPSVGPGNVLKDLILSNHIEVTYLTKIFRQLQNSNIITNAHKVNQGEfpvlnsssgkKDFLF 524 Chlamydia murid...
WP_011714925 451 LQMLPDHCRLLLVGDADQLPSVAAGRVLQDLIQSGVVPVARLTEVHRQAEGSGIALGAVEILHGRrpq-----maRDFKF 525 Magnetococcus m...
WP_000454479 451 FSNISSNSKILIVGDSDQLPSVSPGQVLADLLHIPLIPQTRLEKIYRQSKESTIVTLASQIRQGIlp--------aDFTQ 522 Streptococcus p...
WP_010888537 449 LAAVPPGARVLLVGDTDQLPPVDAGLPLL--ALAQAAPTIKLTQVYRQAAKNPIIQAAHGLLHGEap------awGD-KR 519 Deinococcus rad...
WP_031920285 534 RFHDrsFINCQANQIPTVVEKVVTsaVNKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPkkkDTREIEFGDVVFRKG 613 Staphylococcus ...
WP_010230095 525 FQKE--DPEEAIKHIIHLVSDFVP--KKFGIFMKDIQVLAPMKKGVLGIFNLNKELKAALNP---NKPFIQGKFHSFSTG 597 Chlamydia murid...
WP_011714925 526 VAVTg-GMEHLHQCANRMLEGIDKmmRVGGIDGAEIQVITPMHGTEVGVKALNERLHEQLNPyqaGQEVLELDGFAYRAG 604 Magnetococcus m...
WP_000454479 523 KKADrsYFEIASGHIPATIEKILGaaLRNGIPARDIQVLAPMYRGTAGIDAINQLMQDLLNPpqkDQLSFEAPQCHYRKR 602 Streptococcus p...
WP_010888537 520 LNLTeiEPDGGARRVALMVRELGG-------PGA-VQVLTPMRKGPLGMDHLNYHLQALFNP---GEGGVRIAEGEARPG 588 Deinococcus rad...
WP_031920285 614 DKVLQLVNRPNDNIFNGDIGVIVGIFWAkenalNKDVLVVDfEGNEITFTKQDMMELTHAYCTSIHKSQGSEFPIVIMPI 693 Staphylococcus ...
WP_010230095 598 DRVMQTRNNYNKEVFNGDIGYIASIDFA-----KKSLVACV-DGRYICYSQTELNDLTPAYATSIHKYQGSEASCVILPI 671 Chlamydia murid...
WP_011714925 605 CRIMQTKNDYDLELFNGDQGEIVEISKDaq---gELQVIAKfDEAQKLLDREQMGNIVPCYAITVHKSQGGQFNYVVTPV 681 Magnetococcus m...
WP_000454479 603 DRVIHLVNDAEINVFNGDLGAITDLIPGkytesKQDEIVIDfDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPI 682 Streptococcus p...
WP_010888537 589 DTVVQTKNDYNNEIFNGTLGMVLKAEGAr--------LTVDfDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVL 660 Deinococcus rad...
WP_031920285 694 VKQYFRMLQRPILYTGLTRAKTSLVLLGDPEAFDIGLKTNG-QARLTQLCTLL 745 Staphylococcus aureus
WP_010230095 672 HTSHYVMLYRNLLYTAITRGKKLVILVGTKKAIAIAVRNDKvQHRCTGLQQSV 724 Chlamydia muridarum
WP_011714925 682 VTAHGKMLYRNLFYTCVTRARKGVVLVGSYEALVMAISYKEnMQRNTGLLSRI 734 Magnetococcus marinus
WP_000454479 683 TSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQHIG-TARKTYLIERF 734 Streptococcus pneumoniae
WP_010888537 661 HEAHMPMLSRNLVYTALTRARDRFFSAGSASAWQIAAARQR-EARNTALLERI 712 Deinococcus radiodurans
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