1EU8


Conserved Protein Domain Family
PBP2_TMBP

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cd14750: PBP2_TMBP 
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The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold.
This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270453
Aligned: 41 rows
Threshold Bit Score: 304.603
Created: 18-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:1EU8; trehalose/maltose-binding protein from the hyperthermophilic archaeon Thermococcus litoralis in complex with trehalose, contacts at 4A.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1EU8_A      5 KIVFAVggap---------neieYWKGVIAEFEKKyp----gvTVELKRqa-tdTEQRRLDLVNALRGKSs-DPDVFLmd 69  Thermococcus litor...
EFG09408  117 TIRFKDe----------------HLAEVKRQFEKAnp----gkKVELVPvq-apDNDYATKAQQMMRSASt-APDLIYed 174 Streptomyces clavu...
AEH51529   45 PITLTVisravrgg-vntqlvewFEDIVVPAFTAAmkekgidvKVEFIQfs-gsDEALKQQYALDLSVGR--GADILGfd 120 Thermotoga thermar...
ACT02587   69 TITYRDdgigeq------gvmykWIQELAANFPDKs------iEIKATPiq-asEGDYFAKIALALKSKDt-APDIVTed 134 Paenibacillus sp. ...
ABX32195   29 TGTFAApadr----------whmLISVALEELNKRhp----dmEITMEYev-lpYDDTRSKLITLTAGKT--PRDLVSvd 91  Petrotoga mobilis ...
ACL71046   35 TATFAApker----------wdwLVDKALPVLKANhp----elNIEFEYev-lpYDKTHDKLITMMIANT--PRDLVSvd 97  Halothermothrix or...
ACL70254   54 EIVLTAniqrfdtlktpfdtkkeYIKKAATAWAKEhp----nvRIDIEVapagqTSMTMSKIMTQAISGN--APDFAHid 127 Halothermothrix or...
EFT95517   35 KISWRAtregd-------smrslLNQRWISNFEKKhp----kiKIKLEPiy-asESDYYSKLQLSMSSGKs-TPDIVNed 101 Enterococcus faeca...
ACP23521   25 DITILVpsgs----------egdGLRAAAADYAKMk-------NTKVETvqapyANVFEQGANAGATKSG--VFDIILmd 85  Rhizobium sp. NGR234
EFY07971   34 TLTIAArggs----------hvdVINAVKDKFEKEn-------NCTIKIlg--lENASLKQKVSLDSRNEegAFDLVMld 94  Succinatimonas hip...
Feature 1      ##                                                     #                       
1EU8_A     70 VAWLGQFIASGWLEPlddyvqkdnydls----vffqsvinladkqGGKLYALPVYIDAGLLYYRKDLLekyg--yskPPE 143 Thermococcus litor...
EFG09408  175 TFRINSDIKAGYLRPldeyltgwkewdr-----flpsarnaaraeDGKTYGVPDGTDTRGLWYNKALFar-----agLPA 244 Streptomyces clavu...
AEH51529  121 GFWIPEFAEAGLVKPleeivgpsvwdweg--wqyipqgmreilsyRGKVYGLAAGTDVRVIFYRRDLFqkagipepwQPR 198 Thermotoga thermar...
ACT02587  135 TFILNSDASAGYLTPlddkvgawedwtng---sfiealkkgvtasDGKVYGVPYNTDSRGLWYNKELFkkaglpeewAPK 211 Paenibacillus sp. ...
ABX32195   92 QIWLGEFAQSGFLKDitkevnswgrid------efypanvdgskfDGKFYSIWTWTDARVTWYWKDLLeeag-vdpeMLK 164 Petrotoga mobilis ...
ACL71046   98 GIWLGEFAQGGLLKDiteevkewgrmd------eyyavnregskyNGKYYGIWSWTDARVLWYWPDLLekag-vepeDLT 170 Halothermothrix or...
ACL70254  128 SFWIGRFIDRGILQPlndylsqetidd-------fygftkkvtmrDGKMYAIWAQTDARFLYYRKDWIk-------nPPK 193 Halothermothrix or...
EFT95517  102 SFILSSDARAGYLLSldnylkkwkdwde-----yypslkiggqgaDGKQYGIPGTTDSRGIWTNTKVLee-----agIPA 171 Enterococcus faeca...
ACP23521   86 DPWIPFFAENGHLEDltsyfkgagvegpdndflskslaicrnpynSGPYVCLPYVGNAQMFFYDAAKFkea---gveAPK 162 Rhizobium sp. NGR234
EFY07971   95 DPWIPEFAAGGLLLNltqngykddpdfv-----ttslavckepyaTGDTYALPFAGNVTLLFYNAGVLdkv---gakVPD 166 Succinatimonas hip...
Feature 1                                               ##                                    
1EU8_A    144 TWqelvemaqkiq--sgeretnpnfwGFVWQgkqy---eglvCDFVEYVYSNG-GSLGEfkdgkWVPTLNK----PENVE 213 Thermococcus litor...
EFG09408  245 DWrprswdevldaa-ravkrkvpgviPFNMYtgkapgeaavmQGFEMLLYGTGaDPLYDpg--eRKWVTGG----QGFTD 317 Streptomyces clavu...
AEH51529  199 SWeelletarl------ikkqlpgviPLQINagtemgeattmQGWFMVLLGTG-IHMFDfe--sEKWIVEH----PGILE 265 Thermotoga thermar...
ACT02587  212 NWdevldaart------iksklpdvvPIWMNmgkatgeatsmQTYEMLLYGTG-ERLYDnd--tGKWITKS----QGIND 278 Paenibacillus sp. ...
ABX32195  165 TWdgyieaykkl----apvtmkkgilPMHLVaas-----hspDMWFPYLWMNG-GEILEqkdgeYYPAFYG----EAGVK 230 Petrotoga mobilis ...
ACL71046  171 TWdgyiaaaekl----nntlqnegieGVHLVgap-----hspDMFFPYLWMNG-GKILEkrdgkWYPAFHK----EAGIK 236 Halothermothrix or...
ACL70254  194 TWdelietala-------mkekhnvhGYLAWlgtwe--gavnGNVWPYFWAQG-GRIFDe---sGRPVIGEgknrEALIN 260 Halothermothrix or...
EFT95517  172 DWsphswkdildaankikkslkddtiPFAMAvsttngesvsmQTFEMLLYGTG-EELYNaq--kDKWIVGS----KGILD 244 Enterococcus faeca...
ACP23521  163 TWddvlkaakal-----teqgggryfGYVFRggqg---npvvADFMPIFWSYG-ADMFNad--rTKVTIDT----PEGAA 227 Rhizobium sp. NGR234
EFY07971  167 NWqdvltvsq--------kvkdqgllGYLVRgqqg---npivGDYLPILWAMG-GDVFDkd--mKNVTVNS----QIAKD 228 Succinatimonas hip...
Feature 1                                                      #                              
1EU8_A    214 ALQFMVDLihkykISPPNtyte---mteePVRLMFQQgn--aaFERNWPYawglhnad---dspvkgkVGVAPLPhfpg- 284 Thermococcus litor...
EFG09408  318 ALEFVRTVfr-ekLGPDVsdaldpnvntrVATEWLPEgklaiaLDGSWMGqnwvnkgpr-ewpgwgeeLGRAAMPtqhgq 395 Streptomyces clavu...
AEH51529  266 ALQFYKKVyvdekLGDARmqlts--garaKTFEAFREgkiamlVEGDWFWrsvlapgsewaipnreqiVGWAKMPakepg 343 Thermotoga thermar...
ACT02587  279 ALTFIQTInk-ekLGPPLskvlngqagntATREYLPQgklaisLDGSWITgnyldggaa-pwpeykdvLGFAPMPtskgq 356 Paenibacillus sp. ...
ABX32195  231 ALTFLRDQve-igIRPQVqhqw----gqeFADKRFAVm-----IEGSWLLgkfpe---------gfdfNQIGMIPgfpvp 291 Petrotoga mobilis ...
ACL71046  237 ALTFIKRQve-agIKPQKqhfw----gqeFADKRYAVm-----LEGSWLAgkfsknit---keelenkIGMLPLFptpse 303 Halothermothrix or...
ACL70254  261 TLDFLNRLvd-tgAAPRMvasi---tsidPILAEAKAnsvamvANGNWFYdmllesv-----dnaeekWDFVPLPqmke- 330 Halothermothrix or...
EFT95517  245 SFKFINDIyniykVGPSLsvamnsnygsvIFNDLITKnkvgmaLDGNWDSgnwgpdgis-pvknyekvIKFNLMPteygk 323 Enterococcus faeca...
ACP23521  228 AMKAFMALr---dVSPKGvesy----nanEVGTALAAgt--aaSSINWPNwvatfedp--sqskmvgkISYSPIPagtk- 295 Rhizobium sp. NGR234
EFY07971  229 ALALYIEL-----YKTGAnyd------knDLVASVSKgk--aaMSLGWPSwfisgsd----slanyavIPGKKDAsspe- 290 Succinatimonas hip...
Feature 1                                                                                     
1EU8_A    285 -----hksaATLGGWHIGISKy-sDNKALAWEFVKfvesysvq-kgfamnlgWNPGRVDVYddpav----vsksPHLKEL 353 Thermococcus litor...
EFG09408  396 ----spgtvSLSGGWAWSVPAr-aSNPELAFAFVKalqtpana-trwcvvaaQIAVREDVAadray----ltsmPGVDFF 465 Streptomyces clavu...
AEH51529  344 agyrgqdfvSISGGTGFIINPn-tRHPDLAWALLSfamskemq-iefqkiqpRIRARVDVPvi---------gdPVMSAM 412 Thermotoga thermar...
ACT02587  357 ----apgsiTLAGGWALSIPAn-aQHKDEAWDVIKfalnkens-kklviasgNITVRADVGsdpe-----ytqmPFNQIA 425 Paenibacillus sp. ...
ABX32195  292 e--egmkssTMMGGWLLAIPSt-sQHPELAWELMTimldpevl-tpvlakyvYLPTQKTIAeedpykstleneiPFFEDL 367 Petrotoga mobilis ...
ACL71046  304 ----evdtaTMAGGWVLAIPKt-sRHQDLAWELMEiiqspeim-sqflakfgYLPTQRVIAenpeynkvliesiPFFDKY 377 Halothermothrix or...
ACL70254  331 -----sqraNSNGGWTYAVLTddpVKQELAVSYIMavlgskea-mgerckvyNYLPTRKSVykeyp---yfadnPVQQRF 401 Halothermothrix or...
EFT95517  324 ----kpgfvTMSGGWTWSIPKk-sKNHKAAFEVLKamnsnett-inrtkiegTLAVRKDVSknsq-----ytnkPYIEQS 392 Enterococcus faeca...
ACP23521  296 ------pgsSEIGHWTMGIMAa-sKNKQEAFDFMMwattaeqikisaergnpPVRTSVFTDqeltk----qeqfRHYPVL 364 Rhizobium sp. NGR234
EFY07971  291 ------ysaGVIGNWMMGVTAn-tTHKDLAVKLLQyltsaevq--isaadkgAVPTRTSVFnnadl----nakyPFYQVL 357 Succinatimonas hip...
Feature 1                  #         #  #                      
1EU8_A    354 RAVfe-naVPRPIVPYYPQLSEIIQKYVNsalaGKISPQEALDKAQKEA 401 Thermococcus litoralis
EFG09408  466 TSLvr-ytHYRPALPVYPQVSSAIGEAMEqvttGDATAERAARAYDEQL 513 Streptomyces clavuligerus ATCC 27064
AEH51529  413 AEAvlpltTVRPMYPEYPKISYQAQLMTErvisGIMTPKEAMEAYKEAV 461 Thermotoga thermarum DSM 5069
ACT02587  426 TDYlk-naEFRPAQDKYPEVSTQIQTMVEavasGTSAKDAANKYAQDVT 473 Paenibacillus sp. JDR-2
ABX32195  368 MKAva-igKGRPNIPEYPQIAESLRIAIEevyyGVKTPEDALKNASKKV 415 Petrotoga mobilis SJ95
ACL71046  378 TKIlp-laHGRPNIPEYPQISEALRIAIEevyyRGADPEVALTKAAQKV 425 Halothermothrix orenii H 168
ACL70254  402 AKElk-ygHARPSNSLYGEVSDLVQKELGriltGQTTVEKAVDKIQKVA 449 Halothermothrix orenii H 168
EFT95517  393 TKAle-naYFRPKSDEYPKVSVVIQQLVEsvasGAISPEKAANQYSEKI 440 Enterococcus faecalis TX0012
ACP23521  365 MEAiq-asTPRPRHPKWPEIENAFGIELSkavaGTISPEEALKNSQAAV 412 Rhizobium sp. NGR234
EFY07971  358 LKGte-ksKVRPRTPLWGEIENVYGIELSnaltGQKSIDDALNDAKAAI 405 Succinatimonas hippei YIT 12066

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