Conserved Protein Domain Family
PBP2_GluB

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cd13690: PBP2_GluB 
Substrate binding domain of ABC glutamate transporter; the type 2 periplasmic binding protein fold
This group includes periplasmic glutamate-binding domain GluB from Corynebacterium efficiens and its related proteins. The GluB domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.
Statistics
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PSSM-Id: 270408
Aligned: 27 rows
Threshold Bit Score: 227.151
Created: 5-Jun-2009
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:
  • Comment:based on sequence similarity to the glutamate/cysteine/aspartate binding proteins.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #  #                                                #             
Q8RQL6     36 LLAAIENGNVTIGTKyDQPGLGLRNp-dNSMSGLDVDVAQYVVNsiaddngWDHPTVEWRETpSAQRETLIQNGEVDMIA 114 Corynebacterium ef...
NP_696608  55 VSGAPEGPTIAIGVAaDEPSVGAWHd--GTYQGFDITIAKYVAAkl----gYANKQIVFKQVrPENRRSMLDNGQVDMVV 128 Bifidobacterium lo...
ADD44528   66 VRDILDSGRLTIGSKfDQPLTGLRDkatGRIEGFDAEIGRIITQrif-gkvAEGENLDFIETvPANREKYLEDGTVDLVL 144 Stackebrandtia nas...
ADD43636   73 LADAVKDGKLVVGVKpDQPLIGEKKg--STYEGFDIEMAKLLGMrlf--gkGGEEKVEFKETtSDNREAFLNSGEVDVVI 148 Stackebrandtia nas...
ADP82294   64 LDRIRQRGELIVGTKfDQPLFGLQNpttGKIEGFDTEIARLLSIri----fGSPDKVKFVETvSKNREPFIQQGKVDVVV 139 Frankia sp. EuI1c
CCA60550  411 ADPSGGGAGITIGIKfDAPGLGQTNl-dGSHSGFDVDVATHVARal----gHAPADITWREVrGITPEALLTGGEVDLVV 485 Streptomyces venez...
EFK53765   30 LLAQIESGRVDVGSAfTNPGLSMMRd-dGSPAGLDIDIATYVINsiaddngWDHPEIEWRETpPGQRASLLDNGYVDMVA 108 Corynebacterium ge...
YP_706874  49 MEKIAREGVLRVGTRfDHPGLSARNl-rGEQEGYEIDLVRYIAGkl----gVPADRIEWTEAnSASREQLLQQDKVDVVV 123 Rhodococcus sp. RHA1
ACZ89744  357 LDRIKAGGVLRVGYRdGFPGVSLGVp-pTGFEVEVAEYIARALK-------VPEGKVRFVPVgYADREAAVERGKVDLVI 428 Streptosporangium ...
ACZ84254  508 ADKAAKTGRLTVGMRdFLPGVALNSg--GRWSGFEVDLATEIAKal----gVPASGVTFRATsREERPGLLASGDLDLVV 581 Streptosporangium ...
Feature 1      #      #                                                ##                     
Q8RQL6    115 ATysINPGRSEsVNFGGPYLLTHQALLVRedddr-----iqtleDLDDGLILCSvtGSTPAQKVKDVlpgvQLQEYd-TY 188 Corynebacterium ef...
NP_696608 129 ASwpITDGSSAiVDFAGPYLTTSVGLLVRsdergrftndagsvgDVGDGTVCAVk-GDETVGIFRGNhpqaRIQERs-SY 206 Bifidobacterium lo...
ADD44528  145 ATytITPERKKaVTFAGPYYEAGQAIMTRkgegi------edikDLSKKKVCAAe-GTTSLDNVEKHnpraNVSKPmrNW 217 Stackebrandtia nas...
ADD43636  149 ASysMYPDRVKqFSFAGPYLFTGQNALVSaenkd-----iktidDLAGKKVCIAk-GSGSIDNLKKEnpkaKIETRa-NY 221 Stackebrandtia nas...
ADP82294  140 ATytINDARKKlVDFAGPYYTAGQDIMVKagdtt-----vhgvtDLNGKKVCTVe-GSTSETNLRAKapgaSVVLVd-TY 212 Frankia sp. EuI1c
CCA60550  486 ATftINATRKEkVDFVGPYFVAHQDVLLPtgdts-----vrtptDLNDKTICSAi-NSSSALVIERVapraLVAGRf-GH 558 Streptomyces venez...
EFK53765  109 SNysIDAKRTKeVSFAGPYLLTHQALLTVdgsdi------tgleSLDGKNLCFVt-GTTAAKTLREDipgvVLAEYd-SY 180 Corynebacterium ge...
YP_706874 124 ATlsINDKRRQvISFGGPYLDINNDLVTVkgnpkn----itdpqTPNGVTVCSTl-GGAVSASLRKNfpqtNLIEFd-VS 197 Rhodococcus sp. RHA1
ACZ89744  429 ANlsIDSADRSrVAFAGPYYVAHRDVLVRagmki------sevgHLRGKKLCLAa-GQSTGSMISDMgvtfVAVHDn-DT 500 Streptosporangium ...
ACZ84254  582 ST--YSINDKDdVTFAGPYYLAHVDVLVKdgspi------vsaaGLEGKRVCQPa-GSGSVRALQGEvdrlVLVPAd-TY 651 Streptosporangium ...
Feature 1                     ##                                 #                            
Q8RQL6    189 SSCVEALSQGNVDAMTTDatILFGYAQqr--egEFRVVemeqdgepftNEYYGIGITKDDtEATDAINAALERMyadGSF 266 Corynebacterium ef...
NP_696608 207 AQCVTAVQVGSADAIASDmaVLSGLQAan--gpQYMDViad-----kgEVGYGIAVSQGTsQLAQKIAEALEDMvedGSW 279 Bifidobacterium lo...
ADD44528  218 SSCRQALLEKEYDAVSTDdvILYGFLSed--psKLEISkkt-----ftTEPYGIGLPKGStELQKFINETLELAfdnGDW 290 Stackebrandtia nas...
ADD43636  222 GDCAAQVKDGTFDAVSTDetILYGYKSqd--keAFRILdsse---nftDEPYGIGMKKGNdAAKDYINEMIKAAyenEDW 296 Stackebrandtia nas...
ADP82294  213 SSCAEQLLDGRVDAVTTDnvVLLGLVSqh--kdALKLVgta-----ftSEPYGIGLIKGDdGFRAFLNDTLDEAyrnGDW 285 Frankia sp. EuI1c
CCA60550  559 EQCVIDLAQGSADAVSTDdaLLAGFAAqpkfkgRFKLAgfr-----ltDEPYGIGLPKGS-PLRAEVRKALEAMiadGSW 632 Streptomyces venez...
EFK53765  181 TACLDALRAGAVDALSTDaaILSGFSAhe--pgVFQLVplerdgaplnDEHYGLGLPRDNdASVSAVNEALEKMhddGSF 258 Corynebacterium ge...
YP_706874 198 SKCIDALKNGSVDALATQgpIGAGYVSkd--qkDIELInkp-----faVESWGVGIAKGDvAFCEFLNSAITDYysdGSA 270 Rhodococcus sp. RHA1
ACZ89744  501 SRCANRVADGRADALPGDdvLIAGFGArlr-gpGLKIAgir-----ltTERYGVALRSGDpRACQAINGAIRAMyadGTM 574 Streptosporangium ...
ACZ84254  652 TGCMNKLLAGEVDAVPGDdlVLAGFGNre--siGYKVVglk-----ltDERYAVAMKKGDrRTCKAVQGVIADLyesGTM 724 Streptosporangium ...
Feature 1              
Q8RQL6    267 QRFLTENLG 275 Corynebacterium efficiens YS-314
NP_696608 280 TAAKDTFTS 288 Bifidobacterium longum NCC2705
ADD44528  291 QTAFDSTLA 299 Stackebrandtia nassauensis DSM 44728
ADD43636  297 DKAFELTFG 305 Stackebrandtia nassauensis DSM 44728
ADP82294  286 ASAFRSTVG 294 Frankia sp. EuI1c
CCA60550  633 KKAVEKNLP 641 Streptomyces venezuelae ATCC 10712
EFK53765  259 DRFVDEHLA 267 Corynebacterium genitalium ATCC 33030
YP_706874 271 EEAWADSLG 279 Rhodococcus sp. RHA1
ACZ89744  575 QALLERNFG 583 Streptosporangium roseum DSM 43021
ACZ84254  725 AKLLDRHFS 733 Streptosporangium roseum DSM 43021

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