Conserved Protein Domain Family
NHLM_micro_HlyD

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TIGR03794: NHLM_micro_HlyD 
NHLM bacteriocin system secretion protein
Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a leader peptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Leader Microcin, or NHLM. This family, therefore, is designated as NHLM bacteriocin system secretion protein. Some but not all NHLM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]
Statistics
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PSSM-Id: 274787
Aligned: 5 rows
Threshold Bit Score: 494.363
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
EAY27730      16 RLSSPDNIQELVQVTSTRSWLALIALGGLIFALLLWSFFGELPKTVRGKGILIQSGGIADITSMGSGIVGQVLVREGESV 95  Microscilla mar...
EDM96917      13 KVASPFELNRLVSIFSGREALALLALGVTVVAALAWGICGVIYERVSGNGIVMLQSRFDTIQAPAGGVLISFDLETGDFV 92  Victivallis vad...
WP_012033526  13 KLSSPEQLDQLITVVSPRAWFALAAIGAIMVTAALWGIFGSIPTRVYGQGIVTKSYGVYNIIPAGSGRITDIRVSVGDQV 92  Pelotomaculum t...
WP_012171729  30 RNTSPDQLDLMVRVSSPMGWLVLAVFICVVLGGLAWSILGTAPIKVAGTGVLQGTGGVLLVSSPGNGPVSDLKVAVGAQV 109 Azorhizobium ca...
WP_011317977  16 RLSSPERLDQLMQVVSPKSWLPLVALGSIVGVAFIWGIYGSIPITVEGRGVLIYPSNVVPLQSKSAGQIMALNVKVGDVI 95  Anabaena variab...
EAY27730      96 SKNDTIAIVAQPELRLQIENAQEKLTYLKEKRNRIINYTI--KSARKKQLLKAKYA-LED-----------------NEQ 155 Microscilla mar...
EDM96917      93 RRGQMVGRLFSFSDLENLRESYQKLKMLQGNLEEVRRYTGwlKKGKQNHFQKSSEV-LDEtigrlne----elewlsRYV 167 Victivallis vad...
WP_012033526  93 KKGDVVARIEQPRLVEQING-------LQDQLENLRNFDVngPGPGEKKFLGPELYdLYElagkire----araalpYEE 161 Pelotomaculum t...
WP_012171729 110 HAGEIVAVLSDPVLDARAQTITARLAQLQEEQRKLAAFQAreKEVRARADAQRKEA-LENtirqare----reaaltQVL 184 Azorhizobium ca...
WP_011317977  96 KKGQVLATIDQAELRKRLQQQRGKLTQLESQDKAVGSLQGrrLEQEERSQQQQRQY-LRQrilelqaitpllktkgnTSV 174 Anabaena variab...
EAY27730     156 GKIKRLLKQQelkf--------knlELLLQRKRIPK----AEVDKAHLIY---------------------LTTKTRYDS 202 Microscilla mar...
EDM96917     168 DKGRGLSERG---------------AISQQQWHEEQek-yHAKLKSRADY---------------------LLRKLEEEN 210 Victivallis vad...
WP_012033526 162 ANYKNALSGKehei--------eiaRITLRQARVNEankqEYVDKLTWLYqngaiaeidltgakkdlellrLQTRAAEED 233 Pelotomaculum t...
WP_012171729 185 ANQRDLLSRGlat----------rdRVLITENDREQar-rDAADAANAINa--------------------LGVEADERG 233 Azorhizobium ca...
WP_011317977 175 GQQRQGLQQRlqqaqaltsvflrrmKIRQELFQKEGaisgDEALKAEQEYlqnlekiadiqaqlkeldvkeTQQEKDYRE 254 Anabaena variab...
EAY27730     203 let--------vlqRYNQQIFALPgvkdQ----ELETLESD---INDLRGNISEMNVKFNLLTYIKSSYEGKVIELMAKK 267 Microscilla mar...
EDM96917     211 --------------SLSEADFTLA----K----EVMSVEVE---VKSALYEVELLRNKLEYNTRIVSTHSGTVTSVNYTP 265 Victivallis vad...
WP_012033526 234 lakltageweetiiTYRAKLQQAQlqlqLleekFDTTKAVK---ITETEEKIKKLQDELNLASEVVSQVDGRVLEVRCGK 310 Pelotomaculum t...
WP_012171729 234 ir------------------------aeR----DMLDLSAR---LSQSRQELAEVEAERAARTLVRAPGDGRIIELSVAL 282 Azorhizobium ca...
WP_011317977 255 nltlv----adlqsQLKQLDTQQAsvaqQ----DLENVTARnkeIQEVKREIGALELQLGDNSQIISQHSGRILEITLTP 326 Anabaena variab...
EAY27730     268 GQLVEQGAPIISL--EVEDHKYEgLEAVIYIPPEDGKKVAQGMEVKIAPTTVKIEETGYIKGKVVQVSGYPSTKYGMTRI 345 Microscilla mar...
EDM96917     266 GSIVAAEANLASLi-DLDDQTDEtWELYAYFSVADSKKIRPGMSAIVTPSSVKAERDGSIRGTVTHVGTYILPVESIDRT 344 Victivallis vad...
WP_012033526 311 GDLVQPGMPLFSL--ERQGRTIKt-EVVMYVRAEEGKKITPGMEAMISPTTVKKEEYGYMLGRVVSVSEYPATGQGMLHT 387 Pelotomaculum t...
WP_012171729 283 GDRVSAGSSLMRLvpEVRGAAGEgLVGILYVPSSEGKKVRPGMPVQVVPSTVNMERDGFIRGEVIRVSETPATREAVQQT 362 Azorhizobium ca...
WP_011317977 327 GQVVNAGTRLATI--EAENPQSK-LVGVTYFPVAEGKKIQPGMSIQITPQTVKRERFGGIVGNVTSISRFPITKEAAANE 403 Anabaena variab...
EAY27730     346 LGNQELVQAFTGQ--DPp-IAVFVALEQDSTAYSGYVWTTQRSPEIKINAGTLCSANIIIKKEKPIGLLIPGLSN 417 Microscilla marina A...
EDM96917     345 FRNAAFAQYLLKQcaNMp-VEVRILLSRDRSSPNGFRWTSGSGPDIEVSAGTLCAASVVVDKEPPLELVFSGLRK 418 Victivallis vadensis...
WP_012033526 388 LGNEDLVRKLAAQ--GAs-LELHIDLIADDSTTSGFKWSSPKGPPLKINSGTLCDGSVKVMEQRPVSLVIPALKK 459 Pelotomaculum thermo...
WP_012171729 363 LKNEAFVARLLAN--GPp-FEVQVALKRDPSSVSGFAWSSELGATRPVEAGTVVSGSVVVERVRIITLVFPAFER 434 Azorhizobium caulino...
WP_011317977 404 VGNSEVLEGLVSQ--QQglIQVFSHLELDANTPSGYKWSSSTGPHLNISSGTTTIVRVKVEERAPITFVLPILRS 476 Anabaena variabilis
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