2X32,1Y0G,3HPE,2FGS,3Q34


Conserved Protein Domain Family
YceI
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smart00867: YceI 
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YceI-like domain
E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to polyisoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.
Links
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Statistics
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PSSM-Id: 214870
Aligned: 312 rows
Threshold Bit Score: 33.1194
Created: 14-Jul-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2X32_A         8 AYSLDat------aSFLNFVSSKKTHVl---ETHRFDVLSGGISTA----GEAQLVIDLNSVNTgIDVRNGRmRdylfet 74  Saccharophagus ...
YP_074527     49 AYYVDtaq----sqASYAVDETFLGQRldvtAVGRTSALSGAIVLQdgviQPSTVEVDLTTLRSdQSRRDNq-Vqrvldt 123 Symbiobacterium...
YP_250714     53 SWQVVrgagdnvsqAGYTFDEKLPAGSk--tTSGRTENVEGDVKVEdkklTEGKITVDVASISSdVEKRDINvRksilnt 130 Corynebacterium...
NP_939578     57 EWSVTygkapnissAGFTFHEVLPGDKr--iTSGSTRSVSGNVSVQnshlTSGTVTIDMADIHTdNQKRDTNvRskifet 134 Corynebacterium...
NP_738213     94 SWSVVpgsipnttsAGFTFDEILPGEEk--tTSGSTSGVTGEIEIAnnslVSGLVTVDMTNISTdQEKRDINvRmklfnt 171 Corynebacterium...
YP_001138431  78 TWDVApgsipnttsAGFTFAEILPGEEk--iTSGSTTGVTGEVVIEdnslISGLITVNMTHITTdQEKRDINvRtklfht 155 Corynebacterium...
YP_716436     72 TWTIApg-----seVGYRVKEILFGQNt--tAAGRTKQVSGSLTIDgsraSQASFSVQMATVASdEARRDNQfRgrimdt 144 Frankia alni AC...
YP_001360154  78 TWTVApg-----gtAGYRVDEVLNGQRi--tVTGRTDQVTGDFVVAggqlTAATVSVDLASVSTdSSQRDGQfRsrvvdv 150 Kineococcus rad...
YP_704109     54 QWTVTpgqgsnqtaAGYTVHEILNGASv--tVVGSTADVTGNATVEdeklTAGEVTVQVATIATdQSRRDNQfRgnvmdt 131 Rhodococcus sp....
YP_001222069  59 DWKVGgs-----syAGYRVDEVLNGTPv--tVNGRTDAVTGDITVAgsqvTKGTMTVDVTKIHTdQPPRDAYfQneamkt 131 Clavibacter mic...

2X32_A        75 ATYSVATVtVPVDLAAVAGLAVGEDml-vDVSATLDLHGVPGVIDTQLNVQRlSATrimvqNQSPLLIKAADYSLEAgiE 153 Saccharophagus ...
YP_074527    124 RNHPKAVFrIQGAEGDP-VLTEG-QevpiRLTGTMTIKGVDRPLTFEGTAKL-TGGvl--tLTAQTTFAMTDFGVDP--P 196 Symbiobacterium...
YP_250714    131 DKFPKASFtLTEPADVSKLPDDG-TtekvKVTGDLELRGKKNPVTAELKVLR-TGEhv--iLQGNIPFKRSDFDIQT--P 204 Corynebacterium...
NP_939578    135 AKYPEASYeISQAVDLSAVPSDG-TsielKIPGKLTIHGVTRDVTPDFTIIR-DGNtv--kVSTTIPINRLDFNVHT--P 208 Corynebacterium...
NP_738213    172 DEFPTATFeVTESVDLSSIPDDG-TvgqvVVPGELTVHGQTNEVAPTFDVLR-DGDqv--iIASDIEINRLDYGVET--P 245 Corynebacterium...
YP_001138431 156 DQYPEATFeVTDSVDLSALPDTG-SiaqvVIPGELTIHGETKAVEPTFDVLR-TGDqv--iVASDIEINRLDFGIET--P 229 Corynebacterium...
YP_716436    145 DTFPTATFtLAEPVDIGAVPTDSKTtravAAKGDLTLRGKTRRVTMTLQSRW-DGTsi--rTVGQLPVVFADYDIPN--P 219 Frankia alni AC...
YP_001360154 151 ERFPTADLvLTRPVPLG-GLDVG-AtipvTLTGTLALRGTTREVTFPATVQR-TGEda-vtVTGSLPVTWSDHGVEA--P 224 Kineococcus rad...
YP_704109    132 GTFPTATFtVDSPVDLSGLPADG-SvgtvSAQGTLTLKGQSRPVTVDIDVLR-SGDdl--iASGSIPVTWTDFGVTP--P 205 Rhodococcus sp....
YP_001222069 132 GDFPTATFtLTQPIAAD-GVEAG-VpatyDVTGDLTLHGVTKSVTAQMQASF-TSDgg--qIVGSIPITFQDFGVQA--P 204 Clavibacter mic...

2X32_A       154 TlrnlaslnvisTTVPVDFVLFY 176 Saccharophagus degradans 2-40
YP_074527    197 Nianf---vaveDEVTVSVTFVG 216 Symbiobacterium thermophilum IAM 14863
YP_250714    205 Qfvaa----tiaDEGTIDLLLVL 223 Corynebacterium jeikeium K411
NP_939578    209 Efvaa----kidENGEINVLLNL 227 Corynebacterium diphtheriae NCTC 13129
NP_738213    246 Efvaa----kiaELGEINVRLAL 264 Corynebacterium efficiens YS-314
YP_001138431 230 Efiaa----kinETGEINVRIVL 248 Corynebacterium glutamicum R
YP_716436    220 Sfpgi----steDHGIMEVSLVF 238 Frankia alni ACN14a
YP_001360154 225 Dlgfv----sveDTGTIEFSVSA 243 Kineococcus radiotolerans SRS30216
YP_704109    206 Slgfv----tvdGNGTVDFLVSF 224 Rhodococcus sp. RHA1
YP_001222069 205 Slgfv----tveDHGSVEFSLDV 223 Clavibacter michiganensis subsp. michiganensis NCPPB 382
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