1XXO,1RFE,2ASF


Conserved Protein Domain Family
Rv1155_F420

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TIGR03618: Rv1155_F420 
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PPOX class probable F420-dependent enzyme
A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity]
Statistics
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PSSM-Id: 274679
Aligned: 36 rows
Threshold Bit Score: 90.8167
Created: 9-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1XXO_A        10 LLAVIS-GNSIGVLATIKHDGRPQLSNVQYHFDPRKLLiqVSIAEPRAKTRNLRRDPRASILVdaDDGW-SYAVAEGTAQ 87  Mycobacterium t...
WP_011603634  92 HRDLLD-SALTAVFVTIGADGRPQATAVWYLPDGPTVK--VSMISTRRKLVNLRRNPVATLFLvdPANPgRTLEIRADVE 168 Frankia alni
WP_011605381   8 HRDLAQ-NAEVAILTTLGPDGAPQTTAVGYLLDDGVFR--ISVSSDKQKLKNLQRTPQCSLFLldITNVyRTVEVRGTAE 84  Frankia alni
WP_003898271 287 LRQVLD-APVFGTVATIDPDGAPQQSVVWVGRDGDDVL--FAVATGSRKERNLRRDPRVSILLspPDEPyTYAVIHGKAT 363 Mycobacterium s...
WP_011210609  11 LKTYIDeAKVFATVATNGPGGQPHLTVVWLARDGDDLL--FSTTVDRQQGKNLAADPRVTVLInpPEKPyVYAEIRGTAT 88  Nocardia farcinica
WP_011436532   8 HRDLLE-RPLFAHLATIRPDGQPQVNPMWFSWDGEFLC--FTNTTVRYKYRNVTANPHVAVSIndPDQPyRYLEIRGVVE 84  Frankia
WP_011292741  11 REDILT-KRSFAHVATIGPHGEPQSNPVWFEWDGEYIK--FSQTTTRQKYRNLKRDSRIALSVhdPDEPhRYIEIRGRAE 87  Thermobifida fusca
WP_010987663  40 VRTLLD-GKNFAGVATLGPDGAPQNSVVWIKREGDTVL--FSSTAGRQKVRNLRRDPRISLSVfdLANPyTSVEIRGTAE 116 Streptomyces av...
WP_011602808   8 HRDLLE-RPLFGHLATIRPDGTPQVNPMWMLWDGTFLW--FTNTTTRQKYRNVTATPQVAVSVndPEAPyRYLEIRGVVE 84  Frankia alni
WP_011564040  12 HRDLLE-SRALAHVATIGPKGEPQCNPVWFDWDGRHIK--FSQTTARQKYRNVRRDPRVALSIvdPENPyRYLEIRGIVE 88  Rubrobacter xyl...
1XXO_A        88 -LTpPAaApdDDTVEALIALYRNIAGehsdwDDYRQAMVTDRRVLLTLPISHVYG 141 Mycobacterium tuberculosis H37Rv
WP_011603634 169 -LV-PDpD--KTVLHRITDRYNV--------DFARFSALDSERTTAVLHPRRVVV 211 Frankia alni
WP_011605381  85 -VI-LDdD--YTWAAKIAESRGRTAD-----DIRKLTPPGEHRYSIAVTPTKVNT 130 Frankia alni
WP_003898271 364 -LH-TEgG--HQLRDALAVKY-TGKTyaegnADAAARYGDVAMTVVRVTPERTVG 413 Mycobacterium smegmatis
WP_011210609  89 -LT-PDpD--RTLPDQLSLKYTGQRYa----EFNPASAQDGDRIVVRVTPRKVVG 135 Nocardia farcinica
WP_011436532  85 rID-PDsA--GTFFMTLADRYAMALD--------GPPPDAQYRVVYVVRPTGSSS 128 Frankia
WP_011292741  88 kIE-PDpN--RSFINKMSKKY-LGQ------ETYPPESPGEERVVVYVRPEHTTK 132 Thermobifida fusca
WP_010987663 117 -IL-PDeN--KRLPYELSHKY-LG-------IDPPAEKDDEVRVIIRVVPQKIVG 159 Streptomyces avermitilis
WP_011602808  85 rID-PDpL--AEFFMRLADRYAMKLD--------GPPADAPHRVAYAVRPTAVSF 128 Frankia alni
WP_011564040  89 kIE-DDpD--HGFINAMAKKYLGV-------EEYPHHRPGDERVVVYVRPEHTTH 133 Rubrobacter xylanophilus
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