Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

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cd19965: PBP1_ABC_sugar_binding-like 
monosaccharide ABC transporter substrate binding protein CUT2 family and similar proteins
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
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PSSM-Id: 380620
Aligned: 23 rows
Threshold Bit Score: 313.825
Created: 26-Jun-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #                                                                  
SOE94789   37 NIVMLThgaatnaFWQAVKKGFDDACtr-vQAHCQMVFtqtd-gsiEQQSANFQAAVArKPDAILTTivddnALTPMIND 114 Burkholderia sp. D7
AOL16548   50 KMIFNGhwgpenvFGNVVENGFDAACel-tGADCKMYRpqngssdvSEIISNLQTAINqNPDVLIATdi-ytSVQPYLHQ 127 Sulfolobus sp. A20
CAH39551   34 KFDYIIhssasntFWQAVKKGMDEACtq-vKAQCQMIFtqte-gsvSEQASNLQAALAgKPDAIATTivddkAIEPILKE 111 Burkholderia pseud...
EYR82859   28 KFVYLTqtgidnsFWQSIKKGMDDACaq-fEADCQLIFttpn-gdlQKHLQNLDTVVEqGVDGIVTVivnddLYDETIKK 105 Shinella zoogloeoi...
NP_435279  22 SIAFIShssasntFWQAVKKGYDDACek-vGASCQLILtqte-gavEQAVANLQAAIAsRPDAIFVAivdnnAYDNVIKE 99  Sinorhizobium meli...
OXM68425   43 RFVFVNhvt-tnsFFVPTRSGLADAAsllgVPEPQWTGsen--gnvAQMASAMETAINsKVDGIAVAltddhAFVELTKR 119 Amycolatopsis sp. H5
ALL69947   54 KIVFVNhvt-tnpFFVPTQYGIQDSTal-lGMDYQWTGsan--adiAQMVNAVNAAIAgKADAIAVPivdpkAFDKPIQA 129 Paraburkholderia c...
GAK57168  433 RFAIITpst-atdFWRPVDKGMQDAAel-lNVNVTHQGpqd--fnvAAVVSAVQSVLQeGIDGVAVFvptsgSMDNIFRQ 508 bacterium UASB270
CCN71763   35 RFTYLTqtgidntFWQTIKRGMDDACet-lKADCQLLFtqen-gnlQMHLQNFETVVNqGVDGIVTVvvddnLYDEAIQR 112 Vibrio nigripulchr...
BAV51289   66 KFHFVChvt-ldqFFTPTVYGIQDACaa-fGCSYQWTGsqk--nvvSEMVSAMQTAIAqKSDGIAVClvdptAFDAATDM 141 Mesorhizobium loti
Feature 1                #                                                            #       
SOE94789  115 ARAkHIIVIAYNvdqsggaa-gaakrqaFIGQNFVPAGRSLARQLTsqfpkdGPIRVLIGVSa-pGQNWAEQRAKGVMEG 192 Burkholderia sp. D7
AOL16548  128 ASQqGIIVILVNvnaptqqdfeytgavsFIGQDLVEAGYVQAQALSky--fpQGSHVVIIDEg-pGQVWAEQRNQGIEEF 204 Sulfolobus sp. A20
CAH39551  112 ARNkGVTVLAANvdsskga--kgsvrqaFIGQGFDAAGYALAQKLAekfpksGPVNVLVGISa-pGQNWSEQRGAGVMRF 188 Burkholderia pseud...
EYR82859  106 AVDkGIPVITANvddsqga--agnarnaFVGQDLFEAGYVLMKGLHakipadQPIHALLGLSr-pGESWAEARIGGAKKF 182 Shinella zoogloeoi...
NP_435279 100 AVDaGILVLAVNvddsega--kgnarkaFIGQGFTAAGYSLAKAQSenfpkdGPLNLLVGVNa-pGQTWSEQRAGGVTKF 176 Sinorhizobium meli...
OXM68425  120 ALGqGIPVIAYNasaag------nypltYVGQDLYLSGFRMGQRIAqk---iTSGDILVGISq-pGGNNVQPRLDGITDA 189 Amycolatopsis sp. H5
ALL69947  130 ALDaGIPVFAYNadapqgs---enprlsYIGQDLYLSGYQMGERIAsl---vDSGLVALFIAt-pGQLNIQPRLDGATAA 202 Paraburkholderia c...
GAK57168  509 YQKaGIPIMVINtgleda----erfglgFDGHDNYLIGRAWGQKILeslgknPEGKHICFLSeapQQSSLEHRMKGAQEM 584 bacterium UASB270
CCN71763  113 AVDkGIPVIVSNvddtqge--lgsarlaFVGQDLFQAGYEVAKGLAeqfdrsKPAHVLLGLAr-pGESWAEDRIGGAKKY 189 Vibrio nigripulchr...
BAV51289  142 AAQaGIPVVAFNadvpvgs---pnkrlsYVGQPLYQSGYNSALKWLkl--ipKGGHVMLSIGv-pGSLNTQPRLDGYIQA 215 Mesorhizobium loti
Feature 1                                                                               #     
SOE94789  193 ldewkranpartvVIDRIDSGTdlSVTGERVGAYLTahpdtTAYFDmg-ffHAAVARTLKDRnvppgkVLLAGFDIVpqv 271 Burkholderia sp. D7
AOL16548  205 lks-------ygcTWDVIESSFdlSQVSSQISAYLEanpntKAILSng-ygGAVAQQVFPKLniapgqIPVATFDITpqv 276 Sulfolobus sp. A20
CAH39551  189 madykaanpgrkiTWKRIDSGTdlAVTAERVGAYLNanpdtTAYFDtg-fwHAGVAKALKDRgvppgkILLGGFDIVpdv 267 Burkholderia pseud...
EYR82859  183 ldeakaaepnrqiSYEVIDSSNdiSVTASRICQYVQgkpetNAYVDag-fwGAGAGECLRDLgikpgqLHMATFDLVpvv 261 Shinella zoogloeoi...
NP_435279 177 leeykaehsdrevNITRIDSATdlALTADRIGAYLNanpdtAAYFDtg-ywHAGVAKVLKDRgiepgkVLLGGFDLVpev 255 Sinorhizobium meli...
OXM68425  190 lkqa-----apgvRVQSVNTGAeqAGELNAMTAAYTgntgaKGIYAvdagsTAACAKLIADRgls-gkVGAGGFDLLddt 263 Amycolatopsis sp. H5
ALL69947  203 ikks-----gkkiDIQTIATGAtvNEELSKIKSFYLghqdlKGMFAvdagsTQGVAEVMKESnlpakgVHGGGFDLLprt 277 Paraburkholderia c...
GAK57168  585 lep-------akvRYDILDTGTdrIQAYRLVEDYYRthpdcAGLFStdtigTPVAGEFVRKNglq-hkVIVGGFDLTpev 656 bacterium UASB270
CCN71763  190 lkelndqnpewkvTFDVIDSGNdlSITGSRICQYVQghpetSAVIGag-fwFAGAGECLRDLgkkpdeILMGGFDLVpil 268 Vibrio nigripulchr...
BAV51289  216 ikds-----nsgvTYDVVNTGPdpATEISRVESYYLshknvNGLFGtggsdTYACGFVSNKYglvkggGAVAGFDLFpqt 290 Mesorhizobium loti
Feature 1                   #                                   
SOE94789  272 lqmmkagYIQAEVDQQpYAQGFMPVMQVYlaksf--glapTDINTGNSLV 319 Burkholderia sp. D7
AOL16548  277 lnailagYVQLTIDQQpYLQGFLPVIQGIfikky--mfggWNVNTGSLVI 324 Sulfolobus sp. A20
CAH39551  268 lnsmkagYIQVEVDQQpFLQGYLPVIQANlikky--klsaWDVETGKGLL 315 Burkholderia pseudomallei K96243
EYR82859  262 ldemkkgYVDITIDQQpYYQGYLPILQLAmmkkf--glsaFDVNTGKAVV 309 Shinella zoogloeoides DD12
NP_435279 256 lqqmeagYVQVQVDQQpYMQGFIPVMQAYlwkta--gltpSDVDTGQGIV 303 Sinorhizobium meliloti 1021
OXM68425  264 vagvkggALDFTIDQSpYLQGFLSVLYLYlfrlsgtlvapPATDTGLTFV 313 Amycolatopsis sp. H5
ALL69947  278 vqlihdgFLDFTIDQQpYVQGFYTVVQAFvflasgglvgpANVNTGLKFV 327 Paraburkholderia caribensis MBA4
GAK57168  657 iegilkgYIVFAIDQYpYLQGFQTVLQLFfaatl--gfrpFVHKQIPAFI 704 bacterium UASB270
CCN71763  269 idemkkgYVHLTVDQQpYLQGYLPILQLHlinkf--glsaWDVNTGKALI 316 Vibrio nigripulchritudo SFn118
BAV51289  291 ldfikagDVNFTTDQQaYLQGFLPVQQMYlyklsgglvgpANSDTSQAYV 340 Mesorhizobium loti

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