Conserved Protein Domain Family
YbaK_EbsC

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TIGR00011: YbaK_EbsC 
Cys-tRNA(Pro) deacylase
This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434) likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism. [Protein synthesis, tRNA aminoacylation]
Statistics
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PSSM-Id: 272853
Aligned: 17 rows
Threshold Bit Score: 158.549
Created: 7-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAN54194         2 TPAVQMAKKAKIPFEVLEYSHDPHCa-A-YGEEAANVLGLAPAQVFKTLLVATDKAHap---lAVALVPVDHQLNLKAVA 76  Shewanella on...
AAM35819         5 TRATKALDAAGVGYVLHPYDYRADAd-A-KGLQAADALGLQPHTVLKTLMAWVDDKA------VCVVIPCDRRVSLKKLA 76  Xanthomonas a...
CMCP6:VV1_0247   2 TPAINLAKKKKVPHTIHEYQHDPRAt-S-YGLEAAEVLGQDPKKVFKTLLFCLNGEAkn---lAVAIIPVDQKLNLKLAA 76  Vibrio vulnif...
CAF19082        18 TPALALLTERQIPFELDVHDVDPKSskG-FALDASEVMGVEPEVVFKTLMADIDGEH------VVAIVPASRTLNLKQLA 90  Corynebacteri...
CAE49225        10 TPALAVLEAAGIEHSVSTFEGGTDH----FGDAAAAALDVDSDRIFKTLVIDLTAGKgpkrqlAVACIPVTSKLSLKKAA 85  Corynebacteri...
CAD64914        13 TLVEKILDKANISYQQYEFPTEAEG--D-VQQLQVDHLGVDEHHIYKTLALIGNKTGp-----VVGVLPLDEHLSYKKLA 84  Lactobacillus...
P36922          10 TNAMRMVEQHKVPYKEYEFAWSEDH--L-SAESVAESLGIEKGRIFKTLVTVGNKTGp-----VVAVIPGNQELDLKKLA 81  Enterococcus ...
WP_010994835     3 TNAARLLDKLGITYEILNYEVDPDD--L-AAESTAQKVGLPPEQVFKTLVVRGDQTGi-----CFAVLPGNAHLDLKALA 74  Nostoc sp. PC...
WP_010970785     5 TRATQMLTKAGIAFATVTYDYDPNA--DrIGLQAAEAIGEAPHLVLKTLMAELDGKp------VCVVVPSDREVSMKKLA 76  Agrobacterium...
WP_003976757    16 TPATVALTAAGVTYTVHAYEHDPAHp-S-YGEEAAEAMGVSPERVFKTLVADVDG-Al-----TVAVVPVAGQLDLKALA 87  Streptomyces
AAN54194        77 KCLGQKKLQMADADLAQKSSGYLVGGISPLA--QKKLLPTIIDESAKQFDKIYVSAGRRGLEICLTANDLAKLCRGSFAD 154 Shewanella on...
AAM35819        77 SAYGGKSARMMDVADAERRTGYKVGGISPLG--QQRQAPVLVEVTALDVPALWINAGQRGLLLELPGTQLVHALAARACA 154 Xanthomonas a...
CMCP6:VV1_0247  77 KAANGKKADMADPEIAQKTTGYVVGGISPLG--QKKALPTFLHMSAGQQETICVSAGKRGLEIELAPKDLLMLTRGHFAE 154 Vibrio vulnif...
CAF19082        91 KAGKGKHANMMDRSRAQVVTGYVPGGISPIG--QKNKHRVFLDESAILQERIYVSAGRRGWSLIIAPDDVLLATDGVYAD 168 Corynebacteri...
CAE49225        86 AALSASKATMADQHDAAKSSGYIPGGISPIG--QKHPLPTVVDETAILFDTIFVSGGKRGLDVELSGEDLIRVVDGSFAD 163 Corynebacteri...
CAD64914        85 KLSGNKKVGMIPLKDLERTTGYQHGANTPVGiwETKKFPIYLDETAKQQGKILVSSGKIGRSIEIDADDLRKLVHGTFGP 164 Lactobacillus...
P36922          82 KASGNKKVEMLHLKDLEATTGYIRGGCSPIG--MKKQFPTYLAEEAQQYSAIIVSAGKRGMQIELAPEAILSLTNGQFAE 159 Enterococcus ...
WP_010994835    75 RISGNRKIETVPLKEVQPLTGYIRGGVTALA--SKKSYPTYVDETATLFEKITVSGGMRGMLILLNPSDYLSALNGVVGA 152 Nostoc sp. PC...
WP_010970785    77 AAFGGKSANMMKPADAERATGYHVGGISPFG--QKKQVPTAIEADAMVHDYVYMNGGQRGLQVRLSPRDAQKVLDAIVAP 154 Agrobacterium...
WP_003976757    88 AAVGGKRAAMADPALAERTTGYVRGGISPLG--QRKRLATVLDASASGHATICVSAGRRGLEVELSPDDLARLTDAVLAP 165 Streptomyces
AAN54194       155 IK 156 Shewanella oneidensis MR-1
AAM35819       155 LC 156 Xanthomonas axonopodis pv. citri str. 306
CMCP6:VV1_0247 155 LC 156 Vibrio vulnificus CMCP6
CAF19082       169 IA 170 Corynebacterium glutamicum ATCC 13032
CAE49225       164 LQ 165 Corynebacterium diphtheriae
CAD64914       165 IT 166 Lactobacillus plantarum WCFS1
P36922         160 IT 161 Enterococcus faecalis V583
WP_010994835   153 IA 154 Nostoc sp. PCC 7120
WP_010970785   155 LV 156 Agrobacterium fabrum
WP_003976757   166 Ig 167 Streptomyces
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