Conserved Protein Domain Family
Germane
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smart00909: Germane 
Sporulation and spore germination
The GerMN domain is a region of approximately 100 residues that is found, duplicated, in the Bacillus GerM protein and is implicated in both sporulation and spore germination. The domain is found in a number of different bacterial species both alone and in association with other domains such as Amidase_3 pfam01520 Gmad1 and Gmad2. It is predicted to have a novel alpha-beta fold.
Links
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Statistics
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PSSM-Id: 214905
Aligned: 108 rows
Threshold Bit Score: 40.3715
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
YP_706261    207 ASQLIGLLIDGP---KAa-lAPAVRNELGDGVSVRGPITKADGRtaqvgvglggIRIDFAG------VPPMdAQAKQLFA 276 Rhodococcus sp....
ZP_03772885  140 LEETLKSLIKGP---NEyelKNNFLSLIPIKTKLLNLSLSE-GI----------AKINLSKefy--enSFG-IEGIINQI 202 Borrelia sp. SV1
YP_001318594  86 eEVVVAELQKAP---ED---ED--LTTVLENISVLSV-ERVDEI----------AYVNLSSe----nLSGG-SMTEVGLL 141 Alkaliphilus me...
YP_361230    241 vrfktgeeladkltsiL---KEEKYKVLGKDVKLLN-YVRTDQN----------LRLNFSReli-seLNAG-SAFEGLKI 304 Carboxydothermu...
NP_712884    158 VKLILNSLIAGPvsqEK---EKGILNSIPQSLRYDDNYRIEKGI----------LKLSLSSdl---eKEAG-PEILKDRI 220 Leptospira inte...
YP_004209379 214 RTQAVGEVLSDA---P------SWLEGVLRGAGLSTIKLAVDSVpvk----nnvVEIHLNSgi--naLN---EEERGLLV 275 Bifidobacterium...
YP_001090194  97 ENTLFEELQK--------------LKVVPESAKLNSFTTKDIDGvk-------tGILDVSSdftksnLG---SDAETLML 152 Clostridium dif...
NP_228558     44 VLEIFEALSSP----------PEGLKTFVPEGVLRAYFFVGDy-----------LILDFYGekl-kgMNFd-SE-RYFLH 99  Thermotoga mari...
YP_001306985  39 VELVFKKLATYN---L-----SSGLKTYVPKSILNAYYFVDTa-----------LIVDLSSnni-qnYSVd-EE-VLLVL 96  Thermosipho mel...
YP_520660    259 KQIFEDEFKKQA---A-----N-HGKLIGENVKIKSLYLNQDg----------rVYVDFTKnfv-teMNAg-AGYEGMIL 317 Desulfitobacter...

YP_706261    277 AQVIWTLAN-AEISGPYVLLADGE 299 Rhodococcus sp. RHA1
ZP_03772885  203 AQITLTCLE-IKGIDGIILTIENN 225 Borrelia sp. SV1
YP_001318594 142 QQVIMTLTE-LENVEQVQFLVDGS 164 Alkaliphilus metalliredigens QYMF
YP_361230    305 DSIVNTFGR-AFGTEGVIINVEGK 327 Carboxydothermus hydrogenoformans Z-2901
NP_712884    221 DQLIYSLME-NLPIQGVQLKINGK 243 Leptospira interrogans serovar Lai str. 56601
YP_004209379 276 HRIRLTMGDgNAEY-ALRITGDGV 298 Bifidobacterium longum subsp. infantis 157F
YP_001090194 153 DSVARTYIK-NMNVEQIKITVDGS 175 Clostridium difficile 630
NP_228558    100 QVLYTTFLN-VKGVNNVYIIIDGK 122 Thermotoga maritima MSB8
YP_001306985  97 QILYSLFEN-VQGIDRIYLLVDGK 119 Thermosipho melanesiensis BI429
YP_520660    318 QSIVNTLGN-YYGASEIYLTMEGE 340 Desulfitobacterium hafniense Y51
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