Conserved Protein Domain Family
ribose_uptake_RbsU

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cd23111: ribose_uptake_RbsU 
ribose uptake protein RbsU and similar proteins
This group includes ribose uptake protein RbsU and similar proteins. RbsU is encoded on the rbsUDK gene cluster, which encodes proteins involved in ribose uptake and phosphorylation. RbsR has been annotated as the repressor of the rbsUDK operon, based on its homology with RbsR repressors. RbsU belongs to the glucose/ribose porter (GRP) family (TC 2.A.7.5) and probably functions by H(+) symport. GRP family proteins have a distinctive topology: 10 putative transmembrane (TM) alpha-helical spanning domains per polypeptide chain, which apparently arose by intragenic duplication of an element encoding a primordial five-TM polypeptide. The GRP family belongs to the Drug/Metabolite Transporter (DMT) superfamily (TC 2.A.7).
Statistics
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PSSM-Id: 438514
Aligned: 102 rows
Threshold Bit Score: 309.799
Created: 19-Jun-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
  next features
Feature 1:putative TM1 [structural motif]
Evidence:
  • Comment:GRP family proteins contain 10 putative transmembrane (TM) alpha-helical spanning domains per polypeptide chain.
  • Comment:based on prediction by TMHMM

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##################                                                              
Q88RZ3         7 LIGLGPLLGWGLYPTIASKIGGRPVNQILGSTIGTLIFALIYAWVqgiafpsgmNLWFSILSGIGWASAQIVTFKVFTMV 86  Lactobacillus p...
WP_125767678   4 LIGLIPALGWGIMPLVATKAGGDHINQIMGTTYATFLTAIVIFVSsqph-iswqLLLMGMLSGACWATGQMLQYQLFQKM 82  Lapidilactobaci...
WP_125599316   4 LIGLIPAIGWGIMPLIATKAGGDHINQIMGTTYATLITAIVIYVIsqpq-iswqLLLMGMLSGACWATGQMLQYQLFQKM 82  Lapidilactobaci...
WP_026738683   4 LIALIPALFWGILPLVVSSIGGSPNNQIIGTTLGAFVVALAVAIFvpan-lvwpVIIGGAGSGMCWAFGQYLQYVSFTKI 82  Lonsdalea quercina
WP_057799666   4 LIGIIPAIAWGILPLAVTKIGGKTTNQIIGTTFGTFIVSLIVWLImqpa-vttgQFLLSALSGAAWTIGQFLQYTAFKRI 82  Pediococcus arg...
WP_017262509   4 LIGLIPAIAWGILPIVVTKIGGKPVNQIIGTTFGTFIVAVITWLFirpe-igvdQFWLTVLSGASWAFGQYLQYMAFQRI 82  Furfurilactobac...
WP_046442907   4 LIGLIPAVSWGLLPLAVSKLGGKPINQILGTTLGALLVALIVQAAsgqs-asgtVFLFCFISGAFWAFGQMLQYTAYTEI 82  Christensenella...
WP_007341979   4 LIGLLPALFWGILPLCVARIGGRPTQQIMGTTLGTLAVAVLFWLVmqpe-tdgrTLLMGFLSGAFWAFGQMNQYRAYTQI 82  Neisseria bacil...
WP_056974856   5 IIAILPAILWGCMPIFTSKIGGRTVNQILGTTFGALLTAIVFFVAlrpn-itseIFLFSFLSGLSWSLGQVLQYESFKAL 83  Holzapfelia flo...
BAV88545      29 LIGLIPALFWGILPLCVSKIGGKPTQQIMGTTMGVLLMGIATSLLffpmridawAFFLCFLSGASWAFGQINQYRAFTQI 108 Rothia aeria
Feature 1                                                                                        
Q88RZ3        87 GSSRAMPITTAFQLLGASLWGVFALGDWPGamdkvlGGLALVGIIIGAWLTVWSEHkdagna----rtlrqAVIWLAVGE 162 Lactobacillus p...
WP_125767678  83 TVSKAMPISTGLQIIGTALIGVLVFGEWASarmkiiGTLAIVGIIIGMYFTTIRSHqqdsqs---ngdlgmLIFTFFIST 159 Lapidilactobaci...
WP_125599316  83 TVSKAMPISTGLQIIGTALIGVLVFGEWAAtsmkiiGTLAIIGIIFGMYFTTIRSKsqagtek--rystasLIITFIVST 160 Lapidilactobaci...
WP_026738683  83 DVSKAMPVSTGLQLIGTSLFSVCFFGEWKStk--mlGFFAIFLVIVGVYLTTYTSKkntsre----qhllaGVGILIVSM 156 Lonsdalea quercina
WP_057799666  83 GVSQAMPISTGLQLVGTSLLGILAFDEWSKgnelliGIIALVVIIIGIVLTTIDGEqsnskt---knaigpTIVIFLIST 159 Pediococcus arg...
WP_017262509  83 GVSKAMPISTGLQLVGTSLLGVLAFGEWSGsvelliGFIALVVIVVGIVLTTVDGAkqtdek---rpslgmTILIFALST 159 Furfurilactobac...
WP_046442907  83 GVSKAMPLSTGMQLLGTSLLGVIAFGEWASaqskliGFASVTIVIVGVIITSYQENkkkndn----anmkkAVIVLLVSA 158 Christensenella...
WP_007341979  83 GVSQALPISTGMQLVGTSLMGVAVFGEWGSatqkivGALALVLIIAGIALTAKKENppadgk----gslktGIITLLVST 158 Neisseria bacil...
WP_056974856  84 GVSKAMPISTGLQIVGTSFGGVLLFSEWAStsakiaGFVAIIIIIGGIYLTTISEKtpenasnapkiktssIFWIFFFST 163 Holzapfelia flo...
BAV88545     109 GVSQTMPLSTGMQLVGTSLMGVVAFGDWGTaqakviGAVALTLIIIGIWMTTKQEHpephsg----gnmrsGVITLLIST 184 Rothia aeria
Feature 1                                                                                        
Q88RZ3       163 IGYWAYSAAPQATNIGGEEAFVPQAIGMVIVSIVYalflasr--geklalVEGVSYTHIISGFFFAFAALTYLISAQpnM 240 Lactobacillus p...
WP_125767678 160 LGYLGYNVFPQLVGADPWAGFLPQGIGMALMSTIFalfsgrn--kqhnyfRDKSTWFNLASGFFFAIAALFYIISAR--R 235 Lapidilactobaci...
WP_125599316 161 MGYLGYNIFPQLVGADPWAGFLPQGIGMALMATIFalyrthrtptaknyfTEGATWRNLASGFFFALAALFYIVSAR--R 238 Lapidilactobaci...
WP_026738683 157 FGYIGYSALPRLFNLSGWDAFLPQTAGMVAMSLLLsikql------gstlKEKRTYWSMLPGLIFAVAALGYLISAQ--R 228 Lonsdalea quercina
WP_057799666 160 VGYIGYSAFPRMAKVSGLQGFMPQGLGMALMALILvlstg-----krkvfTEKVTWIGLIDGAIFSIAALTYLMSAQ--L 232 Pediococcus arg...
WP_017262509 160 LGYVGYSAFPRLANVSGWQGFLPQGLGMALMALVLtlvta-----gphilSERVTWISLIDGVVFSIAALTYLISAQ--R 232 Furfurilactobac...
WP_046442907 159 VGYVGYSGFPRFVSANGWAEFLPQAVGMFSASVIFslfmt-----rgsalGQKSSYKNILPGLVFSIGALTYLLSTA--R 231 Christensenella...
WP_007341979 159 VGYVGYSFFPNFAESSGQAKFLPQAVGMATAAVVLsllsr-----dgsrpWDKKSLQNLVGGVVFSFAALTYLMSIEptR 233 Neisseria bacil...
WP_056974856 164 IGYVGFSIFPRYAAVQGFDGFLPQTIGMVLGALICmflpqn---kdvrplKETVTYKNMLVGVIFAGGSLSYLISAG--L 238 Holzapfelia flo...
BAV88545     185 IGYVGYSFFPNYVSVDGWYKFMPQSVGMVVAAITMsmltr-----dgtrpWDKKSLQNIICGVIFSGAALAYLVSIEphR 259 Rothia aeria
Feature 1                                                           
Q88RZ3       241 NGLATGFILSQTSVVLATLTGIWFLGQKKTTKEMWVTIGGLILIIAAAAVT 291 Lactobacillus plantarum WCFS1
WP_125767678 236 NGVATGFALTQMSVVLSTIGGILFLHEHKTRKELVFTLIGLALVMAGGITI 286 Lapidilactobacillus wuchangensis
WP_125599316 239 NGVATGFALTQMSVVISTIGGILFLHEHKTKKELTFTLIGLALVMVGGITI 289 Lapidilactobacillus achengensis
WP_026738683 229 NGVATGFTLSQMSVIISTLGGIFILKEHKTRKELTLTLIGLALVLSGGIII 279 Lonsdalea quercina
WP_057799666 233 NGIATGFTLSQMNVVIGTIGGILILHEKRSKAGIIWTIAGLVLVVVGGVLI 283 Pediococcus argentinicus
WP_017262509 233 NGVATGFTLSQMNVVLATLGGIFILREHRTPRGLVWTVVGLLLVVVGGVMI 283 Furfurilactobacillus rossiae
WP_046442907 232 NGVAIGFTLSQMNVVIATLGSIFLLGEKKTKKEMKAVVGGLALVVTGGILI 282 Christensenella hongkongensis
WP_007341979 234 NGVATGFTLSQMNVVIATLGSIFLLGEKKTRKEMRFVLAGLAMVVIGGIMI 284 Neisseria bacilliformis
WP_056974856 239 NGVATGFTISQMNVVFSTLGGVYILKEAKTKKELTYTLIGLLLVIAGGIMI 289 Holzapfelia floricola
BAV88545     260 NGVASGFTLSQMNVIISTLGSILLLGEKKTRLELLYVLGGLALVVIGGVLI 310 Rothia aeria

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