1HFJ,1DJP,1WSA,1AGX,2WLT,4ECA


Conserved Protein Domain Family
L-asparaginase_II

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cd08964: L-asparaginase_II 
Click on image for an interactive view with Cn3D
Type II (periplasmic) bacterial L-asparaginase
Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type II L-asparaginases, which tend to be highly specific for asparagine and localized to the periplasm. They are potent antileukemic agents and have been used in the treatment of acute lymphoblastic leukemia (ALL), but not without severe side effects. Tumor cells appear to have a heightened dependence on exogenous L-aspartate, and depleting their surroundings of L-aspartate may starve cancerous ALL cells. Type II L-asparaginase acts as a tetramer, which is actually a dimer of two tightly bound dimers. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase.
Statistics
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PSSM-Id: 199208
Aligned: 189 rows
Threshold Bit Score: 236.253
Created: 28-Mar-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Comment:Type II L-asparaginases are active as homotetramers. Two intimate dimers each provide two active sites; the N-terminal domain of one subunit and the C-terminal domain of the second subunit appear to each contribute residues to each active site.
  • Structure:1DJP: Pseudomonas glutaminase-asparaginase dimer binds inhibitor in one of two active sites of the dimer
  • Structure:4ECA: Escherichia coli asparaginase II homodimer with covalently bound catalytic intermediate in two active sites
  • Citation:PMID 8706862
  • Structure:2WLT: Helicobacter pylori L-asparaginase monomer binds aspartic acid, contacts at 4 A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              ##                                             ###                     
1HFJ_A      5 PNIVILATGGTIAGSAatgtqttgykagaLGVDTLINAVPEVKklaNVKGEQFSNMASENMTGDVVLKLSQRVNELLard 84  Pectobacterium chr...
1DJP_A      3 ANVVILATGGTIAGAGasaansatyqaakVGVDKLIAGVPELAdlaNVRGEQVMQIASESITNDDLLKLGKRVAELAdsn 82  Pseudomonas sp.
ADB58930    1 MDVTLLSTGGTIASTDadgg-----arptRTGAELLEAVPELEshaSLSVDEVAQVPSFEMDAETLETVGERVRELEadp 75  Haloterrigena turk...
ADB48628    9 RRVRILGAGGTIAMRGtsa-------tpqLGVAALVAAIPGLHagdGLEAFDVVNKPSPHLTLADQLEVCRQARDAAr-- 79  Conexibacter woese...
ADD05591   21 PHVRVISTGGTIASTGddnets--gktpsVSGEDLLDAVPELTdyaSLDVETVCQRSGFQITVENATDIVDAAERAAde- 97  Natrialba magadii ...
NP_743320   8 PRLSIATLGGTVSMRAgavgd---gvtpsLDCERQLLQVPQLRemaQLNVASLCLLPSASLGFATLLEVLAWARGEVer- 83  Pseudomonas putida...
ADE01867    3 PQVTVLSTGGTIASTDgegg-----atpsKRGAALVDAVPELGeyaEVEVRDVALRPSFDMDFETVAATAHAARDAAvd- 76  Haloferax volcanii...
ACM57848   26 PRVTVVACGGTIASEPddgg-----aapaKTGDDLVAAVPGIEryaAVSAREVCSQPGFDVRWRDVLATATAAREAVad- 99  Halorubrum lacuspr...
EEJ58464    2 HTVHVVGCGGTIASEPaedg-----aapaKAGDELVRSVPDISeyaDLRVTDVGSRPGFDMDFGVVAAAAEEVRTAVad- 75  Halogeometricum bo...
ACK51892    5 PRVIILSTGGTIAMIArgsda----galrLGAKALAAAVPQLEaiaDCETRDILAKPSASLTLADQALIGEAAVAAAq-- 78  Methylocella silve...
Feature 1              ###                       #                                            
1HFJ_A     85 dVDGVVITHGTDTVEESAYFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDkqs-rgRGVMVVINDRIGSA 163 Pectobacterium chr...
1DJP_A     83 dVDGIVITHGTDTLEETAYFLNLVQKTDKPIVVVGSMRPGTAMSADGMLNLYNAVAVASNkds-rgKGVLVTMNDEIQSG 161 Pseudomonas sp.
ADB58930   76 tVDAVVITHGTDTMEETAYYLDVTVQPETPVFLTGAQRRPDEVSSDGPSNLLTAVRAAEAfvdrdaGGTFIAFNETVHSA 155 Haloterrigena turk...
ADB48628   80 rGMGVVVTHGTDSLEETAMLCDVIHDAEAPIVFTGAIRPATAAGADGPANLLDAVSVAASeea-agMGVLVVFGGEIHHA 158 Conexibacter woese...
ADD05591   98 dVTGVVVTHGTDTMAESAYYLDLVTTANVPVVFTGAQRPFDQEGTDGPSNLLTAVRAAVDdr--feTGSYLAFNDTIHAA 175 Natrialba magadii ...
NP_743320  84 gAQALVLSQGTDSLEETAYFLDLLWPFDVPLVMTGAMRSASQPGNDGPANLLAAAQVALAqds-rgRGVLVVMNDQVHCA 162 Pseudomonas putida...
ADE01867   77 gADGVVVTHGTDTMEESAYYLDLALDLDVPVVFTGAQRRPNEVSADGPSNLLTAVRAAVDesftgrGGVYVAFDEQLHAA 156 Haloferax volcanii...
ACM57848  100 gADGVVVTHGTDTLADTAFALDLLTDLPAPVVVTGAQRRLDEPSSDVPANLTLAVRAAADdr--faPGVHVAFDDEIHAA 177 Halorubrum lacuspr...
EEJ58464   76 gADGVVVTHGTDTLADTAYALDIACNVPVPVIVTGSQRRFDEPGSDAPSNLLTAVRAAVDgq--faPGVHIAFDDELHAA 153 Halogeometricum bo...
ACK51892   79 tADGVVITHGTDTLEETAFGLALLTRIETPIVLTAAMRRADQPGADGPANLLAAVRVAASkaa-rgAGVLVVIDDEIHAG 157 Methylocella silve...
Feature 1         #                                                                           
1HFJ_A    164 RYITKTNASTLDTFRAneeGYLGVIIgn--rIYYQNRIDKLHTTRSvfdvr-----gltsLPKVDILYGYqdDPEYLYDA 236 Pectobacterium chr...
1DJP_A    162 RDVSKSINIKTEAFKSa-wGPLGMVVeg--kSYWFRLPAKRHTVNSefdik-----qissLPQVDIAYSYgnVTDTAYKA 233 Pseudomonas sp.
ADB58930  156 RSVTKTHTSALEAFRSrnaGPVATVDrngvaIHRRPRSETRLIDATs------------lEATVYTIKSGsaVTGDLVAA 223 Haloterrigena turk...
ADB48628  159 RCARKTDTTSLVAFSSpqtGPLGRVTeg-hpTIWSHLPRNPPFDPPv------------lDKRVLVVPTGagDDGTLARA 225 Conexibacter woese...
ADD05591  176 RWVVKSHTSKLETFASpgaGPVAELTpn--gLRTFREPRSYTDASAipdag----aridpDIRVDIVTNAmgVDGRQIKR 249 Natrialba magadii ...
NP_743320 163 ARVRKTASLAMAAFESpgcGPLGDVVeg--vVLYRHPPGRRKVLPLpy----------rtDQRVALLEACldADTALLQA 230 Pseudomonas putida...
ADE01867  157 RDATKIHTSDLDAFASpdaSPVARFTre--gTRLLRKPGSRSASVDai----------esSKDVAVVQSYigADDRQLRS 224 Haloferax volcanii...
ACM57848  178 RDVVKGHSNALSTMTSpgtGPVATVTra--gSRLVREPRRGVDIDPlvdgi----esadvVPEVPVIHSGtgVSAGAVER 251 Halorubrum lacuspr...
EEJ58464  154 RDAVKTHTNALDTFQSpgkGPVATFTre--tTRLHRDPEQATSDVSlpaaaldadrdtaaYAVVPAVHSGtgVDGASLER 231 Halogeometricum bo...
ACK51892  158 PLIRKSHSFRTHAFSSapfGPIGYVAed--rVRFALVPAAPPPLMRfgg---------grPPIVPIVEAGpgLERETVAA 226 Methylocella silve...
Feature 1                        #                                                            
1HFJ_A    237 AIQHGVk--GIVYAGMGAGSVSvrGIAGMRKALEKgVVVMRSTRTg-nGIVPPdee-----------lpGLVSDSLNPAH 302 Pectobacterium chr...
1DJP_A    234 LAQNGAk--ALIHAGTGNGSVSsrVVPALQQLRKNgTQIIRSSHVnqgGFVLRnaeqp------ddkndWVVAHDLNPEK 305 Pseudomonas sp.
ADB58930  224 ALERGAd--GLVVEGTGLGNVTagLADAARDAIEAgVPVVVTSRCl-eGRVAPvyggdggg-eqlreygAIFANDLTAQQ 299 Haloterrigena turk...
ADB48628  226 ALSTEPd--GVVIGTLGAGHLAppLLELWADAAER-IPVVAYCRPe-rGVVLTgtygyagseqdlrdtgIIPAGFLSPQA 301 Conexibacter woese...
ADD05591  250 ALESTAapdAIVLAGTGLGNATgeLGSVLESAIDDgLPVVLTSRCy-aGEAAGlyggpggg-qtlrevgAISGGDLPAWK 327 Natrialba magadii ...
NP_743320 231 VATLGYe--GLVIAGFGAGHVSasWSEVLEHLAPT-LPVMVATRTg-rGLTARatygfagaeidlqkkgVYMAGQLCPRK 306 Pseudomonas putida...
ADE01867  225 VVEAGAd--GVVLEGTGLGNATnaLGEAAGSLAEDgYPVVVTTRCq-gGAVAPvygspggg-etlrdrrVIDGSDLPAHK 300 Haloferax volcanii...
ACM57848  252 AVDAGVc--GLVIEGTGLGNATaaIGDAVADVLPE-VPVVVAGRPp-aGPTEPvygtpgga-vtlaehgVTFAGPLPASK 326 Halorubrum lacuspr...
EEJ58464  232 FLPDAD---GIVVEGTGLGNATgsLGDAVADALES-VPVVVSSRCh-aGPTEAvygtaggg-vtlrdhgVAYAGTLSTAK 305 Halogeometricum bo...
ACK51892  227 LAAGGFd--GVILSLPGAGHVAaeAAPDLGRLAER-MPVVFASRTg-aGETLCasyayagseidliargLIPARWLDARK 302 Methylocella silve...
Feature 1                           
1HFJ_A    303 ARILLMLALTRTSD---PKVIQ 321 Pectobacterium chrysanthemi
1DJP_A    306 ARILAMVAMTKTQD---SKELQ 324 Pseudomonas sp.
ADB58930  300 ARLRLALALEASDD---EDAIR 318 Haloterrigena turkmenica DSM 5511
ADB48628  302 ARMKLLACVASGLS---VDEVR 320 Conexibacter woesei DSM 14684
ADD05591  328 ARLKVALVLSVAGD---DAEVE 346 Natrialba magadii ATCC 43099
NP_743320 307 CRILLWLLIGTDRQhelQDWLQ 328 Pseudomonas putida KT2440
ADE01867  301 ARIKLMLVLESVGDd--LAAIR 320 Haloferax volcanii DS2
ACM57848  327 ARIALALGLAADLDr--DGEAG 346 Halorubrum lacusprofundi ATCC 49239
EEJ58464  306 ARVKLVLGLTAGLS---REAVE 324 Halogeometricum borinquense DSM 11551
ACK51892  303 SRIALQLALAQGAD---LAQTR 321 Methylocella silvestris BL2

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