Conserved Protein Domain Family
GH57N_APU

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cd10796: GH57N_APU 
N-terminal catalytic domain of thermoactive amylopullulanases; glycoside hydrolase family 57 (GH57)
Pullulanases (EC 3.2.1.41) are capable of hydrolyzing the alpha-1,6 glucosidic bonds of pullulan, producing maltotriose. Amylopullulanases (APU, E.C 3.2.1.1/41) are type II pullulanases which can also degrade both the alpha-1,6 and alpha-1,4 glucosidic bonds of starch, producing oligosaccharides. This subfamily includes GH57 archaeal thermoactive APUs, which show both pullulanolytic and amylolytic activities. They have an acid pH optimum and the presence of Ca2+ might increase their activity, thermostability, and substrate affinity. Besides GH57 thermoactive APUs, all mesophilic and some thermoactive APUs belong to glycoside hydrolase family 13 with catalytic features distinct from GH57. This subfamily also includes many uncharacterized proteins found in bacteria and archaea.
Statistics
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PSSM-Id: 212108
Aligned: 58 rows
Threshold Bit Score: 265.23
Created: 24-Jun-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative activecatalytic site
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # #                                                                        
Q8ZT36          21 IIFIFHNHQPwyldfs---knelaLPWVRMHAVGNYLKVPLLINQsg------------------vSVAFTLSGSLIEQL 79   Pyrobaculum ...
ADM28641       119 LVIVWHHHQPpnylpnglyfadypFRWVWFNLFEPYTTGGPYYVHatvyk-----------mfpnvKTTVHLSPSLLAQW 187  Ignisphaera ...
YP_001541187   109 LALVYHMHQPpwymsdgryyadwaFRYVHAPVMAPFFNGGPYLFHaflnd-----------kysgvKVNIHLSPSLLKQW 177  Caldivirga m...
YP_004244122   357 LVIVWNMHQPlyiep----ngtweQAWVLLHTCHDFLWNGTWVGAyelqall--------lseynvSVTIDFTPVLLYQW 424  Vulcanisaeta...
YP_004245560    97 FVLVFHNHQPihkyp----ngiyhGPWAFQHTWAPEFYPMYNVGPylvharf--------askyrvSITYNLSPSLLWQW 164  Vulcanisaeta...
YP_001041400   145 ILFVWHNHQApnywp----dgtffANWHIDHFFKDSLTPYFKIDNvypdmgtyylhyyllkkypniKVNLHYSPSLLYQL 220  Staphylother...
YP_920336      701 LVFVWHSHQGinawp----ngsfhGPWAFKHTYEDEFKPYYEGGAylvqpvi-------lskypgvKMVYHLSPSLLWQW 769  Thermofilum ...
jgi:Smar_1407  121 FTIVWHHHQApnylp----dgrihGPWAYIYVWSDLLKPYGKGPYhyhsvml--------nihphfKATYNLSPSLLRQW 188  Staphylother...
YP_004176546   110 LALVWHHHQApnylp----dgsihGPWAFIYVYGNSLRPYGNAPYsyhaaml--------ekhrdyHATYNLSPSLIKQW 177  Desulfurococ...
YP_919623      108 VAFVWHHHQApqfyp----dgslkDEWAFIHVAKGDFYAYSGGPYkvhmeth--------kripgfIDVDHFSPSLLEQW 175  Thermofilum ...
Feature 1                                                                                          
Q8ZT36          80 NWYsngtytdarfrisekiargepltieekyamlavpggffdinwqnilnkhpryavllgvrndafnkcppgnmtcvvsr 159  Pyrobaculum ...
ADM28641       188 RNAiengyvmengtk----------------------------------------------------------------- 202  Ignisphaera ...
YP_001541187   178 VDAiekgytlingev----------------------------------------------------------------- 192  Caldivirga m...
YP_004244122   425 ETMltegsfpyspvwpsp-------------------------------------------------------------- 442  Vulcanisaeta...
YP_004245560   165 DDLlsngtfienkdfie--------------------------------------------------------------- 181  Vulcanisaeta...
YP_001041400   221 YIAankgftiydpntg---------------------------------------------------------------- 236  Staphylother...
YP_920336      770 EYGlkygyfdsfsqkf---------------------------------------------------------------- 785  Thermofilum ...
jgi:Smar_1407  189 QIAvekgvefvngek----------------------------------------------------------------- 203  Staphylother...
YP_004176546   178 HTAvkqgvvfktgeq----------------------------------------------------------------- 192  Desulfurococ...
YP_919623      176 LLFlsgklrss--------------------------------------------------------------------- 186  Thermofilum ...
Feature 1                                                                                          
Q8ZT36         160 fsdqdfidlatlfnllwidpyiarqnpeiwalrnktnytredlkkvlqihlelikQVLPVYKKLAEq---GRIELVPVPY 236  Pyrobaculum ...
ADM28641       203 -------------------------------------------iskedktismiaTTLNMYRELASn---GVIEILTSVY 236  Ignisphaera ...
YP_001541187   193 -------------------------------------------hakgsgevnavaKVLDMYRVQANr---GQLDVLSSVY 226  Caldivirga m...
YP_004244122   443 ----------------------------------------stlnvnmtqcletinYTISLYRELAQe---GKVEILTVPF 479  Vulcanisaeta...
YP_004245560   182 ------------------------------------------yigtwdsrialikEAINTYSKLANd---GVIEILTSFL 216  Vulcanisaeta...
YP_001041400   237 ------------------------------------------stkkvppnsslaqTIRDFFKGLKQlydeGRVYLLTTEF 274  Staphylother...
YP_920336      786 -------------------------------------------ispespemarvrKALELYKQLASr---GQIEIFSDFF 819  Thermofilum ...
jgi:Smar_1407  204 -------------------------------------------ydpnhekirlveETLNNYREALFk---GQIDVLTSIY 237  Staphylother...
YP_004176546   193 -------------------------------------------ltpgderariieDTVAKYVRAYEr---GQIDVLTSIY 226  Desulfurococ...
YP_919623      187 -----------------------------------------------tatkedveGLLSFLREKIRe---GIVEPLGSVY 216  Thermofilum ...
Feature 1                                                              #                           
Q8ZT36         237 SHPLMPLL--------ADMGAIYDLKLHVNLSNSLFKRYLGv--TPTGVWPPEQAVNDEVLRLFANAGYIWTVTDedvlk 306  Pyrobaculum ...
ADM28641       237 AHTIAGYVi-------DRLGMDGIIREELEIGKETTKTVMGv--EPVGVWTPEMAWHNRLTELYHDTGIRYTILCgkshf 307  Ignisphaera ...
YP_001541187   227 AHTILGYLa-------SRYEIIDVIDEELGVGMEVTKSTLGv--NPVGVWTPEMAWSMELLDIYEKHKVGYTVLDggnhf 297  Caldivirga m...
YP_004244122   480 YHPLQAII--------YDNGWQSDLLAQILMGEEMTEEVFGv--KATGAWTPEMAFNMGLVHLYNETGIEFTILDaqafl 549  Vulcanisaeta...
YP_004245560   217 AHPIAGYLi-------ERFDIDDLLRWELRRGKEVTEKVLGv--KAVGMWLPELYFSEKLKNILCEEGIEYTVLDgvyhl 287  Vulcanisaeta...
YP_001041400   275 AHTIAGYLi-------EKFNIPYLLKYDIWLGKEWTKKVLGv--DTDAIWTAEMAWSDKLVPIYLDLGFKYTVLDgtyhf 345  Staphylother...
YP_920336      820 NHPIPGYVv------dTYPWGAEAMKIELEWGFNVTKRVLGv--DAKGAWIPEMFFSEKLVPILVQQGVKYIVLDyethy 891  Thermofilum ...
jgi:Smar_1407  238 AHTIGGFLt-------DVLGATNIVEEEIRYGKEVTSKIMGnnyNPQGIWTPEMAFSMKLIPIYYDLDIKYTVLDdkfhf 310  Staphylother...
YP_004176546   227 AHTIGGFLi-------DVLGMEDVIRDEVRYGISITKEVLGv--TPLGAWTPEMAFSMKLIDIYYDNGIEYTVLDdkchf 297  Desulfurococ...
YP_919623      217 AHTVLGLVlkkakqrgLDEIAKKLIEWELREGLKIVEEALGr--RPSGLWTPEMFWHMDLVDLYGSLGVRYTVLCeqhft 294  Thermofilum ...
Feature 1                                                                                          
Q8ZT36         307 a----tapgasHFKLYFVQyg--drKLYVFFRD-KTLSDNIGFryss----lspeAALADFVNYLKRVpre----kcSVV 371  Pyrobaculum ...
ADM28641       308 pr--aigdrgsPYELYRIVyg--gkYINILFRD-QEISDIIGFnnnfpm-lnmafETARDVVRRIVSRr--------GIV 373  Ignisphaera ...
YP_001541187   298 pg--vqgdkgsIYEPYSLGg-----RLTVFFRD-ERLSNILSFqnni-----pdeRSAVKLAAMLSRSiie---tngELV 361  Caldivirga m...
YP_004244122   550 pyttvvsgtpsPYGPIIVEdst-gkQVIVLFRN-TVLSNTFSFayfs----qppqLTARELIHYLARIymq---npgAVV 620  Vulcanisaeta...
YP_004245560   288 ge--sirdkssLYRIYRHD------CLTVLFRD-TALSDLLSFqlnka---snaqEADVNARRLIMELmmrinyvkdGVL 355  Vulcanisaeta...
YP_001041400   346 pg--aqgdkgtIYEPYIVKdsk-grELIVFFRDqEVSDGYIGFtnndwrdprtadRDARALYYHIYNKhsfknykypPIE 422  Staphylother...
YP_920336      892 kg--sdgekrgIYTPYLYQgs--qgQIIVLFRD-TQLSNYISFenrfst-pedadAAARNFVLMVASRrfsd--ptaSVV 963  Thermofilum ...
jgi:Smar_1407  311 fh--aegnkdsQYEPYMVIdteskkYITVFFRD-HDLSDILGFrnnfys-ephawRNAYEFALRVAEKwfd---knvKVL 383  Staphylother...
YP_004176546   298 eg--aegektsSYEPYIALnkesgkHIVVYFRN-HELSDVLSFknnf----tsevHALRNAYEMSLTIakrilessgRIL 370  Desulfurococ...
YP_919623      295 ra---ggdkenIYEPYVVEdpisgrSVVVFFRD-LKLSNWISFkvdfkn-peeadNEARRFVIELAKRrev---apgGIV 366  Thermofilum ...
Feature 1              #                                                                           
Q8ZT36         372 VIALDGENPWeny--pnfGDDFLRVFFQGLAQLEKngtv---kiwKPSDFIKACgneaaelpqrefkyfdlhldlsfyks 446  Pyrobaculum ...
ADM28641       374 TIALDGENWMifskypsnTYPFLYYLYQLIDSAQRkgfi---rclLGRDVVEIYrdrsr--------------------- 429  Ignisphaera ...
YP_001541187   362 VIALDGENFIamsktpamVGLMLDKFYSYLSRMQElgii---etvRLSQVNMSRrsi----------------------- 415  Caldivirga m...
YP_004244122   621 VVALDGENPLifn--pttGPVDLQAIYQVLSEYQGtwf----itqTASEAIATHkpia---------------------- 672  Vulcanisaeta...
YP_004245560   356 TMALDGENWMilptpnpyAALLLERIMMYLSQSKLdgyimpvrpsIIKEFHDEIk------------------------- 410  Vulcanisaeta...
YP_001041400   423 VIALDGENWIlfapshanGALFLDRIYKYVSRLTDqgim---ntgTFRDAVRVHpper---------------------- 477  Staphylother...
YP_920336      964 VISADGENWMifsptvatTGVFFERLCAYLESVKQyiv-----taTVAEVVEGAqsfp---------------------- 1016 Thermofilum ...
jgi:Smar_1407  384 TIALDGENWMsfsvnpplTAYFLDKMIIYLETLSDnkfi---klsTLREIYNKVpanr---------------------- 438  Staphylother...
YP_004176546   371 TLALDGENWMvfsgnpplTAFYLDKLLLFLESLSDagfl---rlmSLREVYSELpatr---------------------- 425  Desulfurococ...
YP_919623      367 TIALDGENWMimpayrkyAPYFLEKVLEYILESQVir------ltTLSKYLDQNppkr---------------------- 418  Thermofilum ...
Feature 1                           #        #  
Q8ZT36         447 irdlptrlvngrIAEGSWSgggsLAVWIG 475  Pyrobaculum aerophilum
ADM28641       430 --------kliyISTNSWIn--gFSKWDG 448  Ignisphaera aggregans DSM 17230
YP_001541187   416 ----------tyIPTTSWLg--gFTKWDG 432  Caldivirga maquilingensis IC-167
YP_004244122   673 --------vltnLPESSWAl--nLNNWNN 691  Vulcanisaeta moutnovskia 768-28
YP_004245560   411 -----------eIPTTSWLg--sPTKWIS 426  Vulcanisaeta moutnovskia 768-28
YP_001041400   478 --------vltsIPWTSWLg--gWGKWTT 496  Staphylothermus marinus F1
YP_920336     1017 --------kltrIPTASWAg--gSDVWTN 1035 Thermofilum pendens Hrk 5
jgi:Smar_1407  439 --------iltnIPTNSWLg--tFRKWRG 457  Staphylothermus marinus F1
YP_004176546   426 --------iltkIPTNTWLc--tFKKWRG 444  Desulfurococcus mucosus DSM 2162
YP_919623      419 --------vldyIPSGSWVel-sDKQWTG 438  Thermofilum pendens Hrk 5

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