Conserved Protein Domain Family
AgrB

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smart00793: AgrB 
Accessory gene regulator B
The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein. AgrB is involved in the proteolytic processing of AgrD and may have both proteolytic enzyme activity and a transporter facilitating the export of the processed AgrD peptide.
Statistics
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PSSM-Id: 214819
Aligned: 16 rows
Threshold Bit Score: 102.329
Created: 12-Jul-2011
Updated: 2-Oct-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
YP_001037735   6 KLCENITNVI--KE-RvK-DI----DDEKAEIINYGLYLWIADIIKLAIIFTAACLLRVFKLAVVFVVCFGLLRIFAGGS 77  Clostridium the...
NP_469388      9 PLSERMADVLisKD-R-W-KD----DEEGYLKVKYGLEIILINVMKFAIVYGIALVTGLLLQTVTVHLSYLWLRRYSFGL 81  Listeria innocu...
YP_300932      7 aKIDNFAKQL--QQ-R-N-NL----DRIEYLKMRLGMQVVVNNFFKTIVIYGVSLLCHMFLYTLTVHLTFFFIRHFAHGA 77  Staphylococcus ...
ZP_00237848   10 NLTEEIASKI--AL-W-A-NNnckgGQIEYLKMKLGLETILINFSKAIFVYGMAILCGVLFQTFILHSAYFAVRRVSFGL 84  Bacillus cereus...
NP_346723     10 KLAEVVSLKL--NK-H-L-KM----EGIELIKLKLGVEIIFINISKLAILFLVSYYFGLIKETIIMLAAFGFLRSNAFGL 80  Clostridium ace...
NP_815518      1 MLIDWILKNI--MDmD-Q-ED----QSGKTQWTKYYLTVYFSGLFNLLMILILSVLFGTLSETFIVYVVLIFLRPVAGGW 72  Enterococcus fa...
NP_786783     12 KLSDRLFAAI--QK-N-L-QL----ERRQALLVKLGIDTVLNVIPKLIITIILALLLHELVPVLVFMGSFLVLRGFAYGR 82  Lactobacillus p...
NP_561787      3 KFLKSAIEYL--AK-D-L-DL----DKELLEQIQYVVIVLTFEFIKCISVILIAGILGYFKESLIVILSMCFIKPFIGGY 73  Clostridium per...
NP_244342      4 RLALTLAHQV--KA-L-N-AE----ETESVEVLTFGFTIILHYLFTLLLVLAVGLLHGEIWLFLQIALSFTFMRVLTGGA 74  Bacillus halodu...
Q7WYU3         4 YLSTNISLYF--QE-N-NsCL----SKKDVLKIQYTLEAILSDLSKFIIIFLVFLFIKEIPLFLFSFIILNSTRPLLGGI 75  Clostridium bei...
YP_001037735  78 HAKTFWGCLLTNSAITFGSVYLSLLLS-SIKPIFLFMLVMPFcaVVLYLYAPADHENKPvVSKKQKRKLKIVAYMVLIAE 156 Clostridium the...
NP_469388     82 HATKTLNCTLISLTMFVLAPFIFQNIP-SNNWIVLGTFAFIL--LNMFLFAPADTESLPlIGEEHRKKLKRKAMIGTLIL 158 Listeria innocu...
YP_300932     78 HAKNSLLCYIQSVIYFVLLPWIVGYVQ-VSSLIMYTLALVGL--IIISIYAPSATKKQP-IPERLRRGKKIKAICLTLIF 153 Staphylococcus ...
ZP_00237848   85 HAKSSAHCTIISVILLVGMSLIAPYIV-LSNYSILGLSLIFI--LCLYRYAPADTEKNPlIGLDRRRKLRKEAIVTCLFI 161 Bacillus cereus...
NP_346723     81 HAKNSIVCTVMSLLMFVLGAYLSKYLL-FNNYMVLASFIIVN--LLLFRYAPGDTEAHPlVGAKLRDKLKKQAVLMGMLL 157 Clostridium ace...
NP_815518     73 HAKTKWLCRLESIVIYVAIPFVLKNSS-VSLPFIYKILLMCLlvVLFYWYAPQGTAIEPvQPSDL-NVLKKQSLIRVCLL 150 Enterococcus fa...
NP_786783     83 HLESDLLCTILTAVTFVGVPYLIQFTDgIPELFRFILCLLLT--VPIGMFSPAVTRKNPiKSQSLKRALKHKAIITSLVF 160 Lactobacillus p...
NP_561787     74 HEDSQLKCFIATLIITTSIIMLVTFNK-LNLFSIVILNLFSI--FSIYNKAPVIDSRFPlTKEHLIKKNKILSVTNSSIL 150 Clostridium per...
NP_244342     75 HLDHSIGCTLLSVLFITAISWVPF----ANNYAWILYGISGG--LLIWKYAPYYEAHQVvHTEHWERRKKRIAYILIVLF 148 Bacillus halodu...
Q7WYU3        76 HCKTYYGCLTCSILYFMIILLFTRLFPeLNTNFYIVFFILSL--AITFIFAPCPNEKRPvKNKATLKILSLISLTFWIIL 153 Clostridium bei...
YP_001037735 157 YLISLSITqNTFSNVIILSTLFVCLGMLPVTYKIMG 192 Clostridium thermocellum ATCC 27405
NP_469388    159 TGIALLIPfAEMKTLIMVGSLFQVISINPLTYKLLK 194 Listeria innocua Clip11262
YP_300932    154 LLI-SLFLnEPYQQLMLLGIVIISILQFPIFFPKED 188 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
ZP_00237848  162 IFIALIVPnQMIKSLLVLGIALQIMFILPITYKLLK 197 Bacillus cereus G9241
NP_346723    158 MAITLIIPdELIKTCISLSSYFEIISILPITYKVLG 193 Clostridium acetobutylicum ATCC 824
NP_815518    151 ILCSLFVK-EKIASVILYGLVIQGLMILPVTKNLIE 185 Enterococcus faecalis V583
NP_786783    161 SFLQFLVSnN-LGTIIVVSLLLVFTLIVPLKGGKSD 195 Lactobacillus plantarum WCFS1
NP_561787    151 FLITLIFFkISWISQTITWTLLIQTLLLFNKYKRED 186 Clostridium perfringens str. 13
NP_244342    149 IILAMLMStqglvlgvllqgvlltpiglkvtrqlnr 184 Bacillus halodurans C-125
Q7WYU3       154 FYLSPLQTrN----CILISIFLQIIQVIIINTKGVI 185 Clostridium beijerinckii
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