4DYW


Conserved Protein Domain Family
NUDIX_MutT_Nudt1

?
cd04679: NUDIX_MutT_Nudt1 
MutT homolog-1 and similar proteins
MutT homolog-1 (MTH1), also known as NUDIX (nucleoside diphosphate-linked moiety X)) motif 1/Nudt1, is a member of the NUDIX hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the NUDIX family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the NUDIX motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved NUDIX motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.
Statistics
?
PSSM-Id: 467562
Aligned: 15 rows
Threshold Bit Score: 189.055
Created: 6-Dec-2006
Updated: 27-Apr-2023
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:NUDIX motif [structural motif]
Evidence:
  • Comment:G[X5]E[X7]REUXEEXGU, where U is a bulky aliphatic residue (usually Ile, Leu, or Val).
  • Comment:The NUDIX motif contains many of the active site residues of NUDIX hydrolases.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                       ##        ############                        
4DYW_A     28 PRVGCGAAIVRD-GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCVVDHIdaa--ngEH 104 Burkholderia pseud...
AAY60415    3 PRVGVGAFIIDEnEKLLLILRNTNPERMHWSIPGGKVEWMETVEDTVVREIKEETSLDIKLESLLCVTDHIike--qeVH 80  Bacillus cereus E33L
AAK23533    8 PRVGCGAAILDAqGRLLLVKRVKAPEADHWGVPGGKLDWGEAARTCAEREIHEELGVRITAGRVLAVTDMVad----dYH 83  Caulobacter cresce...
CAP49416    9 ARVGCGAFIRRSdGRLLLVLRARAPEQGHWGLPGGKVDWMETVEDAVVRETLEETGLHIHLQRVLCVVSQFeralsppQH 88  Xanthomonas campes...
CAC46325    9 PGLGCGLAILRD-GKILLCRRLKAPEAGHWSIVGGKVDHMELAQDAARREAEEESGLSIHSTRFLCVSEQMiea--drQH 85  Sinorhizobium meli...
BAK32471    6 PRVGVGAMIMQE-GEVLLVLRKKSPEKDHWSLPGGKVELYETLEDAVKREIKEELNLEIQLDQLLCVTNHIlie--eaVH 82  Erysipelothrix rhu...
EHH69259    5 PRIGCGAAILVD-GRLLLIRRKRDPEAGCWGLPGGKVDLFEPVRAAVEREVMEETGLRVSASDLLCVIDQIdrd--agTH 81  Gluconobacter morb...
BAK83778    7 PRVGCGAAIIDRdGRILLLRRLRAPEAGCWGLPGGKVEAYETTAHATEREIHEELGITIQACDLLCLVEQMdav--ggHH 84  Gluconacetobacter ...
ABI77654    5 VEAGCGAAILDAqGRLLLIQRLKQPEAGAWGLPGGKIDFGERAEDTARREILEELGIEIELTGLACIAETIdag--dgRH 82  Hyphomonas neptuni...
EJL24576    8 PRLGVGAVILNDkNELLLVLRNRDPEKNTWSIPGGKVDPYEQLETSVIREIKEEVNLDVEIKALLCTAETIlpe--ngEH 85  Brevibacillus sp. ...
Feature 1                                                       
4DYW_A    105 WVAPVYLAHAFSGepr-vvEPDRHEALGWFALDDLPQPLTHATRIALEQV 153 Burkholderia pseudomallei 1710b
AAY60415   81 WVCPTYIATVNDGvvk-rmEPDKILEIGWFSLNDLPKPLTLTTIKALEAY 129 Bacillus cereus E33L
AAK23533   84 WVAITYAVESFEGepl-iqEAHALHEWGWFALDALPSPLTAATRDAVAAL 132 Caulobacter crescentus CB15
CAP49416   89 WVAPVYLAAIDGSetavlrEPEALHDLGWFALDALPTPLTRSATLAVQQL 138 Xanthomonas campestris pv. campestris
CAC46325   86 WISLIYVTENFSGepr-ltEPDKLSDIRWFDLTALPQPLSRFAADAVRAL 134 Sinorhizobium meliloti 1021
BAK32471   83 YVAPTYLAHITDGnpc-lmEPDALGGMGWFPLDELPENLTVTTVNALDAY 131 Erysipelothrix rhusiopathiae str. Fujisawa
EHH69259   82 WIAPVWLVVRPEGtar-lmEPEKHGAFGWFALDALPGPLTAAAVQAISAL 130 Gluconobacter morbifer G707
BAK83778   85 WIAPVYLVTAWQGepa-lmEPEKHEGPRWYAFDDLPDALTVPTRQAIAAL 133 Gluconacetobacter xylinus NBRC 3288
ABI77654   83 WVAPVYSARIISGepe-vmEPEKHGGWGWFDLADLPDRLTSPIKDWLRAQ 131 Hyphomonas neptunium ATCC 15444
EJL24576   86 WVSIIYEVTILSGearnleEDGAIGDMRWFSLDALPSNLACFAVPAIEHL 135 Brevibacillus sp. BC25

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap