Conserved Protein Domain Family
ZntB_u1

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cd12834: ZntB_u1 
Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily
The MIT superfamily of essential membrane proteins is involved in transporting divalent cations (uptake or efflux) across membranes. The ZntB-like subfamily includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.
Statistics
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PSSM-Id: 213368
Aligned: 31 rows
Threshold Bit Score: 295.264
Created: 26-Jul-2012
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:based on Thermotoga maritima CorA and on partial structures: the intracellular domains of Vibrio parahaemolyticus and Salmonella typhimurium ZntB; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                 #  ##         # #                                     
ACB35872     72 SFLWLHFNLAdkaAERWLAEh-tDLAEAFFDTLRGglHSTRVERVeqTLLAVVNDLQFD---FAFEPSDTATLWICLn-- 145 Leptothrix cholo...
EHR02723     48 GRLWLHFNLTdtrSRPWIAAs--QLPPLARELLLSndTFQQLHVIdhCIYGVFSDLVRD---IGSATEETAFLRFAMt-- 120 Bradyrhizobium s...
CAL79993     46 GWYWLHFNLAdarAVQWLSNs--DLPPAARALLLSkdSFQQLHGTenCVHGVIADLARD---IGGSTEEAGRLRFVMt-- 118 Bradyrhizobium s...
ABD86840     56 GLLWLHFNLTdarALQWLGSaapALPEEARALLLSkdTYQQLHASddGAYGVIADLLRE---IGGATEDTGYLRFVMs-- 130 Rhodopseudomonas...
CAE29168     58 GWTWLHLDLTdtrALQWIGGt--ALPPPAKTLLQAadVYQQIHSLdgCVYGAIADLGRD---IDEITEDIGLLRFVMt-- 130 Rhodopseudomonas...
ACL55499     50 GFLWLHLNLAdarIEGLIAEg-rLGPPRLASSAFArdEHQRIAVEggFVGGVVADLAREe--AATKPNPAGRLHFVMg-- 124 Methylobacterium...
ACA19874     57 GFLWLHFDLTtahLDAVFRDg-qLGPPRLATCVFStdEHQRVTVEgnHIGGVVADLTRDeesEADAGADGATGRLHFvlg 135 Methylobacterium...
ABQ67861     42 GFRWLHLSLAhqgTASWINRl-eTLPEDVKELLLAgdNHQRALVDegVVGCVLHDFERD---FEQRSTQVGAIRMALt-- 115 Sphingomonas wit...
ZP_09909954  29 GFRWLHLNLAdhgTRQWIEGa-aMLPEAVRELILSpdTHQRALVDgdTVGCVLHDFERDf--DVADTARVGALRMALt-- 103 Sphingobium yano...
EFH01639     45 GFVWVHLNVAdlrYRDWVAAq-pQIPEEAKALLVEpdTHQRLAADesSLWGVLPDRGRD---LERPEDVLRHLRIAVt-- 118 Methylosinus tri...
Feature 1                       #   #           #  #   #   #  ##  #  ## ##  #            ## ##  
ACB35872    146 rRLVVTGRRKPLRSVDQLRVSVRdgePVRSSADLLAQLLRHQVDVLGDLARQMTNRVDEVEDRLLsgr-lehKRARLGAM 224 Leptothrix cholo...
EHR02723    121 eRLLISGRHQALCSADATRRVLEggyRVDNVAHLLEKIVDEVADTLDRMADKLGQEIDEIEERILaddakpeMRRNLGRL 200 Bradyrhizobium s...
CAL79993    119 eRLLVSGRHHALHAVDVTRRSLEsglRVPSAAVLFERIVENVAEAMEHVVDGFEQQLDDIEEKLLsde-gdnQLPALGRL 197 Bradyrhizobium s...
ABD86840    131 eHLLISGRHRALCAADATRRALEngcRIDSVAELFETIVENVAATMERVIDRLAEALDDIEEEVLsee-eadLRKGLGQV 209 Rhodopseudomonas...
CAE29168    131 eHLVITGRHQPLGAVDAARRALEngqRVESCAGLFDLIVHNVAEAIEAIADDMVQALDQLEEKLLtdd-tdeLRQGLGRL 209 Rhodopseudomonas...
ACL55499    125 pRFLVSGRRHPVVGPDRTRQAAAegeTITAPVRLLESLVGHVVGAMAATGAALSDELDAIEDHILdea-vrdERRRLGPI 203 Methylobacterium...
ACA19874    136 pRLLVSGRRERVESPDAARAAATegaRFASPILLLERLIGYVIASIAASGSKLADEVDAIEDHILeer-vrgDRRRLGPI 214 Methylobacterium...
ABQ67861    116 pVMMITARLHPIRSADNVRNRLThgrRIEEPSDALDLLVTTIAEGLSAEVRDLSGEVQRAEDGFLndv-napTARSLIAI 194 Sphingomonas wit...
ZP_09909954 104 pTLMLTTRLHPLRCADIARHRLErtkGVIGGAQALDLLVGAIAENIADISRTLSADIQRAEDAFLegh-hppQPRDLVGI 182 Sphingobium yano...
EFH01639    119 aQGVVTARRYAVQSSAAVRQAALagaRITSPLDLFEQIVEETLAGMDSAIENLFREFNEIEDRVLdde-ardERRRLGGL 197 Methylosinus tri...
Feature 1       ##  ## ##   # ##  ##  ##           ## ##  ## ##  ## ## ###  ######## ###########
ACB35872    225 RRLLVRLQRLLLPEPAALFRLLQHpppw-mtetDVQDLRDATEEFSVVLRDMVALQERVKLLQEEVAAQVNEQTGRSLFV 303 Leptothrix cholo...
EHR02723    201 RRTCVRLHRQLTGLRTLFHRLDQKntdh-lspdLRIQAGKLAQRLDGLDHDIVELRERSRLLEEELRFKNEEQSNNHLHT 279 Bradyrhizobium s...
CAL79993    198 RRTCVRLHRHLSELRVVLHRFDRNapsd-ikpaLQLRARDLAERLDGLDHMVVELRDRSRLLQEELHLQMEEQTNNSLRV 276 Bradyrhizobium s...
ABD86840    210 RRTCVRLHRQLSGLQQLFHRLEEKdtsg-lkpaLQIAAGKLAQRLDGLDRTIIEMRDRSRLLQEELQLKIEEQGNNSLRV 288 Rhodopseudomonas...
CAE29168    210 RRSCVRLHRHLSGLRVLLHRFNRDgtel--apsLRPCAGKLAQRLDGLDHSVVEMRERSRLLQEELHLQIEEQGNNSLRV 287 Rhodopseudomonas...
ACL55499    204 RRDAVRLHRQLLGLRAAFHRFEEEgeaeglpdrEVATAARIAQRLDSLDRDMLAMAERSRLLQEEFAARLAEQSNRQLFT 283 Methylobacterium...
ACA19874    215 RRDAVRLHRQLLGLRAVFHRLEEDgnteqlpdlAVMTAARIAQRLDALDRDMNLIAERSRLLQEELSARLAEQSNRQLYT 294 Methylobacterium...
ABQ67861    195 RRRLAQLHRMLAGMSTVFRRLEEDeel---peaLLATVEKLSQRLQSLDADVEGVQRQLRQLREEIETQVDQRTNQNLYI 271 Sphingomonas wit...
ZP_09909954 183 RRRLAQLHRLLAGARGVFQRLERDeel---pdaLLPTVEKLTQRLQALDADILESQAQLRLLRDELDIQAAQRTNQNLYI 259 Sphingobium yano...
EFH01639    198 RRQTIRLHREIADAQRVFARAGQSari---geaAQATLRRLSQRFDSLHQELEALQDRARLLQDEIVSNLTAETNRQLYV 274 Methylosinus tri...
Feature 1       ## ### ###### ########           ##  ##            #  #    
ACB35872    304 LTVVTVLALPINIIAGLLGMNVGGIPLAEHAHGFLIIVGIVi-tFMFVAGWWAFRKKND 361 Leptothrix cholodnii SP-6
EHR02723    280 LSIVTSLLLPPTLITGIFGMNTKGLPLTDVESGFFWAALLMa-sSVGAAYLFMRRSGIF 337 Bradyrhizobium sp. WSM471
CAL79993    277 LSVLTALLLPPTLVTGIFGMNTKGLPLTDTEDGFLWAALLMv-lTAGGAFLLMKRIGLI 334 Bradyrhizobium sp. ORS278
ABD86840    289 LSVLTALLMPPTLVTGIFGMNSRGLPFADSDAGFWWAAALIc-mASLAAYLILRRIGII 346 Rhodopseudomonas palustris BisB18
CAE29168    288 LSVLTALLLPPTLVTGMFGMNLHGLPFSEDGGGFGWALVIMl-lSSIVAYVVMKRFGLI 345 Rhodopseudomonas palustris CGA009
ACL55499    284 LSVLTALFLPPTLVTGVFGMNTKGLFLSDFEEGSTIALALAv-aSALAVYLVIRSLGLR 341 Methylobacterium nodulans ORS 2060
ACA19874    295 LSILTALFLPPTLITGVFGINTKGLPFAENEHGSWIVIGLAl-lSAVLAYGAIRVLGIR 352 Methylobacterium sp. 4-46
ABQ67861    272 LSIMTALLLPATFVTGLFGMNTGGLPWAQTSHGTFLATLLAc-aAAGATYLLLRWMGFM 329 Sphingomonas wittichii RW1
ZP_09909954 260 LSIITALMLPATLVTGLFGMNTGGMPFAGASHGTLTATLVAa-gAAGVSYFLLRWMGFM 317 Sphingobium yanoikuyae XLDN2-5
EFH01639    275 LTILGTLLMPPTLVSGIFGMNTKNLFFAESENGTLYAAALCvasAASALLALAYIRKRG 333 Methylosinus trichosporium OB3b

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