Conserved Protein Domain Family
TIGR02436

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TIGR02436: TIGR02436 
four helix bundle protein
This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.
Statistics
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PSSM-Id: 274132
Aligned: 156 rows
Threshold Bit Score: 78.2871
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
ZP_07018309   11 IWQLAKQLAVKFHRIADRLE-Q-R-KLFRYAEQLRAAGLSISNNIAEGCGSIHPKEFDQFLNIARRSLYEDASMVHVFFA 87  Desulfonatronos...
ZP_03723794   16 LKKRTKDFALRVIRMFCALPkT-T-EAQILGKQVLRSATSVGANYREAHRARSKAEFIAKTGDCLREIEETAYWFELLAE 93  Diplosphaera co...
ZP_01629097    6 FKARTKQLALRVIRLVEVLPqT-R-TADVISKQLLRSATSVAANYRAACRAKSAADLIAKLGIVEEEADETLYWLELLVE 83  Nodularia spumi...
ZP_03630965    4 LKDRTKKFALDVIRLCAQFPkS-P-EFQIITRQLMRSATSVAANYRAACRGKSKADFISKLSTVEEEADESLLWLEMLIE 81  Pedosphaera par...
ZP_06202760    6 LKIRLKVFSLRIIKMVDCMPnR-I-SSMAIAKQIVRSGTSPAANYRAACLEKSDKDFLNKLKMVEEELDETIHWLEIIAE 83  Bacteroides sp....
EFK37091      13 FRERTKSFSIAIIRALSSLPyS-D-DISIIRKQIIRSATSVAANYRAVSRARSDKEKFAKMCIVVEEIDETQLWLEIIEE 90  Chryseobacteriu...
WP_012191697   6 lqaRTKKFALHIIQLVNFIP-N-SlAGRVLAQQILRSGTSVGANYREACRARSAAEFISKTNIALQELEETRYWLELLQE 83  Herpetosiphon a...
WP_011964356   6 lklRTKNFSILIINLVEKLPnS-I-AGKTIANQIIRSGTSVGANYRAVCRARSDREFISKMNIVLEEADETMFWLELIID 83  Flavobacterium ...
WP_015814497  12 lqiRTKQFVLRSIKVFKALPpT-E-EARVIGKQFLRSASSVGANYRAVCRARSQNEFFSKISITVEEADESLFWMEIMSE 89  Dyadobacter fer...
WP_012022806   6 LENRLIDFAASIILLTITFE-KnY-AGNHLLGQITRSSTSPALNYGEAQSAESKKDFIHKMGICLKELRETFVCLKIIEK 83  Flavobacterium ...
ZP_07018309   88 LEL-LEn-DEKEELLEECDFLSRKITNYYKSRQ 118 Desulfonatronospira thiodismutans ASO3-1
ZP_03723794   94 SQ--IVpeMKLSSLCQECDELIAIFVTIIKRAK 124 Diplosphaera colitermitum TAV2
ZP_01629097   84 SG--LMsaDKLKSLMQESTEILAMTVASIKTLK 114 Nodularia spumigena CCY9414
ZP_03630965   82 LS--QKaiPELRRLENEAQQLVAIMVSSKKTAR 112 Pedosphaera parvula Ellin514
ZP_06202760   84 SE--MIpaNKLLGLQQEAHELYKIIVSSIVTTR 114 Bacteroides sp. D20
EFK37091      91 LE--YVspEKILHLKTECEELVKVMTTYKFKLS 121 Chryseobacterium gleum ATCC 35910
WP_012191697  84 STL-LDh-RQCHHLVDEVQQLIAIFVTVIKRKK 114 Herpetosiphon aurantiacus
WP_011964356  84 RKW-FDi-NEVSNLLDEGNQLTAIFVSSLKTVN 114 Flavobacterium psychrophilum
WP_015814497  90 AGI-LPs-GKLSALMTEAEELIKILSKARKTVR 120 Dyadobacter fermentans
WP_012022806  84 ANLsTDh-ERLTRAKTEANQLISIFVSSIKTSK 115 Flavobacterium johnsoniae
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