Conserved Protein Domain Family
SDH_SDR_c_like

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cd05322: SDH_SDR_c_like 
Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs
Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.
Statistics
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PSSM-Id: 187583
Aligned: 9 rows
Threshold Bit Score: 448.067
Created: 26-Feb-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
active siteputative NAD(P)
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                          
AAC13413         1 MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDkAANVAQEINAEYGesmayGFGADATSEQSCLALSrgVDEIFG 80  Escherichia coli
NP_755140        1 MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDkAANVAQEINAEYGegtayGFGADATSEQSVLALSrgVDEIFG 80  Escherichia c...
NP_975031        1 MKKVAIVAGGAKSLGKFLALGLDKNNYQVVVLDLNKE-KLDQLKEENHQID-----TFVCDLTNEKDVINVFneIENKYK 74  Mycoplasma my...
jgi:Sterm_1063   2 EKQVAIVVGGGQTLGEFLSKGLAEAGYDVLIADINGEnAEKVKDEISSKYQgn-fqSFQANAANEEEVINLRkfAEQNYK 80  Sebaldella te...
EEQ08998         7 QQQVAVVIGGGQTLGAFLCHGLAEAGYKVAVADLNSDnAQLVADQINAEYGadiarGFQVDATNESSVEMLAkaVDQRFH 86  Yersinia moll...
CBA61366         3 MRKVALVVGGGRSLGEYLSKHLAKVGYDVAIADLNEDnAKKVAEEIETEFGck-svGYGCNAIDERQVISTVkaIENDFD 81  Clostridium d...
BAH64828         1 MNQVAVVIGGGQTLGEFLCRGLAAEGYRVAVVDIQSEkASRVAQEINAEYGegmayGFGADATSEASVTALAhgVDEIFS 80  Klebsiella pn...
CAV17872         1 MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDkAANVAQEINAEYGegtayGFGADATSEQSVLALSrgVDEIFG 80  Escherichia c...
YP_080941        5 KGKVALICGGGQSLGEALSYRMAEAGYDIAVADINGEnAERTADHAAGQYGvk-slWIQADFTKEADVKKMIgrVTDEFN 83  Bacillus lich...
Feature 1                                         #                            #            #   #  
AAC13413        81 RVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGiqGRIIQINSKSGKVGSKHNSGYSAAKFG 160 Escherichia coli
NP_755140       81 RVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGiqGRIIQINSKSGKVGSKHNSGYSAAKFG 160 Escherichia c...
NP_975031       75 TIDTLVYNAGWAKSAKITSFEYQDFITSLKINLDGYFLTAKQAAKIMIKNNtkGNIIQINSKSGRVGSKYNSGYSAAKFG 154 Mycoplasma my...
jgi:Sterm_1063  81 HVDLLVYNAGVARSSKIDSFDLRDWDISVSVNLTGYFLCAREISKIMIKQGf-GNIIQINTKSGKVGSKHNSAYSASKFG 159 Sebaldella te...
EEQ08998        87 QTDLLVYSAGIAKAAPITDFPLDDFDRSLQVNLVGYFLCAREFSRLMIRDGngGRIIQINSKSGKVGSKHNSGYSAAKFG 166 Yersinia moll...
CBA61366        82 RIDLLVYNAGVAVSKKITDFGYKDFKFIVDVNLNGYFLFAREVSKVMIAKGieGRIIQINSKSGRVGSKHNSGYSAGKFA 161 Clostridium d...
BAH64828        81 RVDLLVYSAGIAKAAFISDFALGDFDRSLQVNLVGYFLCAREFSRLMIRDGikGRIIQINSKSGKVGSKHNSGYSAAKFG 160 Klebsiella pn...
CAV17872        81 RVDLLVYSAGIAKAAFISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGiqGRIIQINSKSGKVGSKHNSGYSAAKFG 160 Escherichia c...
YP_080941       84 KIDVMVYSAGIAKSNKITDFELEDWERTIEVNLTGYFLCARETSKVMIEQGs-GSIIQINSKSGKVGSKHNTAYSASKFG 162 Bacillus lich...
Feature 1                                                                                          
AAC13413       161 GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCdYQDVLNMLLFYASP 240 Escherichia coli
NP_755140      161 GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPEQVEQYYIDKVPLKRGCdYQDVLNMLLFYASP 240 Escherichia c...
NP_975031      155 GVGLTQSIALDLAEHNIRVNSLMLGNFLDSEMFEGLIPQYAKKLNIKESEVKQYYISKVPLKRGCsFEDVLNVLLFYISE 234 Mycoplasma my...
jgi:Sterm_1063 160 GVGLTQSLALDLAEHNIRVNSLMLGNLLKSPMFQSLLPQYAKKLGVSEDQVEKIYRDKVPLKRGCeYQDVLNILLFYASE 239 Sebaldella te...
EEQ08998       167 GVGLTQSLALDLADYGITVHSLMLGNLLKSPMFQSLLPQYAAKLGIKPEEVEKYYTDKVPLKRGCdYQDVLNTLLFYASD 246 Yersinia moll...
CBA61366       162 GVGLTQSLALDLAEHKITVNALMLGNLLDSDMFESLIPQYAVKLGIPESEVKQVYIDKVPLKRGCrFIDVANMLTFYASK 241 Clostridium d...
BAH64828       161 GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIDESEVEQYYIDKVPLKRGCeYQDVLNVLMFYASP 240 Klebsiella pn...
CAV17872       161 GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPEQVEQYYIDKVPLKRGCdYQDVLNMLLFYASP 240 Escherichia c...
YP_080941      163 GVGLTQSLALDLAEHNIRVNSIMPGNLLKSPMFQSLIPQYAKKLGIPESEVERVYTEKVPLGRGCtYDDIANAILFYASD 242 Bacillus lich...
Feature 1                            
AAC13413       241 KASYCTGQSINVTGGQVM 258 Escherichia coli
NP_755140      241 KASYCTGQSINVTGGQVM 258 Escherichia coli CFT073
NP_975031      235 KASYCTGQSINITGGQVM 252 Mycoplasma mycoides subsp. mycoides SC str. PG1
jgi:Sterm_1063 240 KASYCTGQSINITGGQVM 257 Sebaldella termitidis ATCC 33386
EEQ08998       247 KAAYCTGQSINITGGQVM 264 Yersinia mollaretii ATCC 43969
CBA61366       242 EAEYCTGQSINITGGQVM 259 Clostridium difficile CD196
BAH64828       241 QASYCTGQSINVTGGQVM 258 Klebsiella pneumoniae NTUH-K2044
CAV17872       241 KASYCTGQSINVTGGQVM 258 Escherichia coli ED1a
YP_080941      243 QASYMTGQSINVTGGQVM 260 Bacillus licheniformis ATCC 14580

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