Conserved Protein Domain Family
HTH_62

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pfam20552: HTH_62 
Recombinase-like helix-turn-helix domain
This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 73 and 103 amino acids in length. This family of proteins show similarity to the HTH domain of recombinases pfam07508.
Statistics
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PSSM-Id: 466701
Aligned: 78 rows
Threshold Bit Score: 67.9711
Created: 27-Mar-2022
Updated: 17-Oct-2022
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_039600408             15 APWEPISPNnvagkgrverpghvanlvwQTRAAEPTPYENQLADSLEAAFLGGAQTPADIVVVLNARGPRnAAGGEAWTE 94  Rals...
PRJNA474466:DM450_23520   9 HVAARSEAKggpttieep--kavenivfQTRGGPLDPFEDRLADELMTVFDGGAVELEDVVAGLNAAGSR-DRAGAPWTG 85 
WP_066858829              9 ILPSCEAAKgggryieep--trvenivfQTRPGALTAFEDRFADALMSVFAEGHDELESVAAGLNSKGST-DPQGASWSA 85  Sphi...
TGG94264                 11 RDWQKVIPAsqpgqghieqpggfanpvwQTRKHAPAQFELDLQAALEEVFAAGATELPEVVQGLNKAGCL-DRTGAQWTE 89 
PMR69724                 15 KTWARIIPSsepgqghierpggfdnrvwQNRQRAPEPFELDLVAALEAVFAEGATALDEVVAGLNARHSQ-DRQGQPWSE 93 
WP_075367626             11 TQWANIIPSseagqghierpggfdnrvwQTRSRAPEAFELALLEALEAVFEGGATELDAVVDGLNARQCF-DRDGLAWSQ 89  Chro...
RDK87420                 12 PDTQALIPAqeggngkihhpgqsqnvvwQTRSRVPDGFESTLIATLESLFDAGAETLPELVDALNDRRVY-DRSGAPWNE 90 
goetting:EBL_c05830      12 PQSHPFQPPkeggngsihkpgqfqniiwQTRSRVPDAFELGLIDALEQLFEQGISALPELIQALNGQKQW-DPQGQPWSE 90 
WP_016346900             12 KPWLAPQPNnvagkgviekpgetenfiwQTRRAEPTQYENDFGDALERVFEAGALELEQVVAGLNKDGFR-TPEGAAWTA 90  Caba...
WP_007619482              9 VPWQQINIVteggkgsietydniehmiwQTRSSSPTKYENNLGDALEIVLAE-THELPEIVLKLNDLGIF-SRDGSPFTE 86  Para...
WP_039600408             95 EAFLAEMRRLGA 106 Ralstonia sp. A12
PRJNA474466:DM450_23520  86 QSFSGQMAASAD 97 
WP_066858829             86 DSLARILSVLGK 97  Sphingobium sp. TCM1
TGG94264                 90 DSFQREMAVLGR 101
PMR69724                 94 ASFLQEMAVLGQ 105
WP_075367626             90 DSFLREMAVLGH 101 Chromohalobacter japonicus
RDK87420                 91 RSFREFLTINGY 102
goetting:EBL_c05830      91 QSFRAFLQVNGY 102
WP_016346900             91 ERLAAELRTLAE 102 Caballeronia insecticola
WP_007619482             87 ESFKQELSRLAE 98  Paraglaciecola arctica
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