6GVW,6GVW


Conserved Protein Domain Family
Abraxas_1

?
cd23523: Abraxas_1 
BRCA1-A complex subunit Abraxas 1
BRCA1-A complex subunit Abraxas 1, also known as ABRA1, FAM175A, and CCDC98, is involved in DNA damage response and double-strand break (DSB) repair and acts as a central scaffold protein that assembles the various components of the complex and mediates the recruitment of BRCA1. The BRCA1-A complex consists of Abraxas 1, BRCC36, BRE, MERIT40, and RAP80, and specifically recognizes 'Lys-63'-linked ubiquitinated histones H2A and H2AX at DNA lesion sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at DSBs. This complex also possesses deubiquitinase (DUB) activity that specifically removes 'Lys-63'-linked ubiquitin on histones H2A and H2AX; its DUB is BRCC36, which associates with pseudo-DUB protein Abraxas 1 which lacks the essential Zn2+-coordinating residues required for DUB catalytic function. BRCA1-A opposes homologous recombination (HR) by suppressing resection. It has been shown for BIR (break-induced replication), an HR-subtype that involves extensive DNA resection and mutagenic DNA synthesis; that Abraxas 1 inhibits DNA end resection through regulating the levels of SLX4/MUS81 chromatin loading at DSBs in response to Topoisomerase I (TOP1) inhibitor-induced DNA damage. Familial mutations in the BRCA1-A proteins Abraxas 1 and RAP80 predispose carriers to early-onset breast cancer, analogous to mutations in BRCA1 and BRCA2. BRCA1-A requires the tandem ubiquitin (UIM2)- and SUMO-interacting motifs (SIM) in RAP80 and the BRCC36 DUB to function in DNA repair. BRCA1-A recruits BRCA1 by binding its BRCT domains upon phosphorylation of a motif near the C-terminus of Abraxas 1. BRCA1 binding to BRCA1-A sequesters the HR activator BRCA1 about 2-10 kb distal from DNA break sites, which is posited to limit HR. It is currently unclear how BRCA1-A is functionalized and targeted by RAP80 and Abraxas 1 and how BRCA1 is inhibited when bound to the complex. BRCC36 in BRCA1-A is activated by assembly due to interaction between Glu30 of BRCC36 and Asn170 in Abraxas 1 which structures the activation loop and positions the catalytic Glu33.
Statistics
?
PSSM-Id: 467803
Aligned: 60 rows
Threshold Bit Score: 584.948
Created: 23-Sep-2021
Updated: 27-Apr-2023
Structure
?
Program:
Drawing:
Aligned Rows:
 
BRCC36oligomer
Conserved site include 1 residue -Click on image for an interactive view with Cn3D
Feature 1:BRCC36 activation site [active site]
Evidence:
  • Structure:6GCF: Mus musculus Abraxas 1 critical Asn involved in activation of BRCC36 in BRCA1-A and BRISC
  • Comment:binding of this Asn to a specific Glu in BRCC36 enables positioning of the activation loop and the critical catalytic Glu

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
6GVW_F         6 EGESTLGVLSGFVLGALTFHHLNTDSDTEGFLLGEMKGEAKNSITDsQMDNVKVVYTIDIQKYIPCYRLFSFYNSlGEVN 85  Mus musculus
B5X1P9         2 EDSNSYIRVSGFVLGSLMFQHLNSDSDVEGLILGETKAEERSNITDsQIDNIQFEHTINIQKHISCRKLNSFYNRiGEVN 81  Salmo salar
KAB5548998     2 EEYSTTVRTSGLVLSSLMFQHLNSDCDVEGLLLGESVGEEKSKITDsQTDHIQFVHTINIQKHITCRKTHSFYNNtCEVD 81  striped catfish
XP_026855089   2 EEYSTTVRISGFVLSSLMFQHLNSDSDVEGLFLGESVGEEKSKITDsQTDHIQFVHTINVQKHITCRRIHSFYNNaCEVD 81  electric eel
XP_022522232   2 EEYSTTVRLSGFVLGSLMFQHLNTDSDVEGLLVGESVREEKSKITDsQTDHIQFLHTINIQKHITCRRIHSFYNNaCEID 81  Mexican tetra
XP_017569556   2 EEYSTTVRVSGFVLGSLMFQHLNSDSDAEGLFIGESLGEENSKITDsQTDHIQFVHTINIQKHVTCRRTHSFYNNaCEVD 81  red-bellied pir...
XP_028660867   2 ENLNVTVHVSGYVLGSLAFHHLNHDSDVEGFLLGEVKAEEKNSITDsQIDDVQVEYTIDIHKHIPCHKTQSFYNSvGEVN 81  reedfish
XP_030624582   2 AEFKTTVRMSGFVLSSLMFQHLNSDTDVEGFILGERVAEERSNITDsQIDQVQLEHTISIQKHVPCRALHTFYNNvGMVN 81  milkfish
XP_028829150   4 EDLNTTVRVSGFVLSSLMFQHFNSDSDAEGFIIGESIGEEKNSITDsQIEHIQFEHTINIQKHVCCHKPNSFYNSvGDVN 83  denticle herring
XP_018609099   4 TELHTTVRISGIVLGSLMFQHFNSDSDAEGFILGESEAEERSNITDsQLNQVQYEHTIHVQKHISCQRLSSFYTGtGEVK 83  Asian bonytongue
Feature 1                                                                                        
6GVW_F        86 EHALKKVLSNVRKt-vVGWYKFRRHSDQIMTFREQLLHRNLQTHLSSPELVFLLLTPSITTEsCSTHCLEHALYKPQRgL 164 Mus musculus
B5X1P9        82 RDEIRHILSNYKEenvIGWYKQRRNTDQQITFREQVVHENLKRALSNHELIFLLLTPSEITTsGSTHKLEYAVYRSHGsQ 161 Salmo salar
KAB5548998    82 KEKIRQVLSNLKEenvIGWYRQRRNTSQQMTLKEQLVHQNLRKLLPYQELIFLLLTPSEVTLsHSTHRLEYTAFIWNGsQ 161 striped catfish
XP_026855089  82 KEKIRQILSNYREenvIGWYRQRRNTSQQMTLKEQLVHQNLRELLPYQELIFLLLTPSEVTLsGSTHRLEYTAFIWHGrQ 161 electric eel
XP_022522232  82 EEKIREITSNFNEenvIGWYRQRRNTTQQMTLKEQLVHQNLRRLLPHQELIFILLTPSDTTSsGSTHRLEYTAFIWNGsQ 161 Mexican tetra
XP_017569556  82 KEKIKQILSNFKEenvIGWYRQRRNSSQQMTLKEQLVHQNLRKVWPHQELIFLLLTPSDGTSsGSTHRLEYTAFIWNGsQ 161 red-bellied pir...
XP_028660867  82 QKALKMIQSFDKQk-vIGWYRQRRNTEQAMTFREHVVHRSLEKHLSNQELVFLLLTSNVFSGsNSTHVLGYAVYKPQGrL 160 reedfish
XP_030624582  82 RDEISRILSNHKEdsvIGWYRQRRNTHQQMTFKEQLIHQNLKKALSNQELVFVLLTATEVTSsGSTHRLEYSTFVSHGsQ 161 milkfish
XP_028829150  84 PDDLRRILSNYKEenvIGWYRQRRNSSQQMTFREQTVHQNLKKFLANEELLFLLLTPSEATVsGSTHRLEYSVYQSLGrQ 163 denticle herring
XP_018609099  84 RDEIKSILAGDKEenvLGWYRQRRNTEQRMTFREQVVHRNLRKALSNHELIFLLLTPTEASStGSTHRLEYSVFRSHGsQ 163 Asian bonytongue
Feature 1                 #                                                                      
6GVW_F       165 FHRVPLVVTNLGMSDQLGYKTEPASCtSTVFSRAVRTHSSQFFnedGSLKEVHKINEMYAAVQEELKSICQKVEQSEREV 244 Mus musculus
B5X1P9       162 YCSVPVLVSNLGLLEEQDYWRLSASCsSVNYNHAVRKHRSKFFssdGSLHEVDEINDMNNSLQGELKMACKKVEESERLV 241 Salmo salar
KAB5548998   162 YSSIPVSVSNLGMLEQQDYWRVSATCpSLSHCQAIKQHRAKFFsseQDLREVEEVNDMNDALLDEMKSACVRVEKSERRV 241 striped catfish
XP_026855089 162 YSSIPISISNLGMLDQQDYWRASAMCpSLNHCQAVKKHRAKFFssdEDLREVEKVNNMNEALLEEMKTACDKVESSERLV 241 electric eel
XP_022522232 162 YSSVLISIGNLGMLDQQDYWRFSTTCpSLSRCQAVKKHKTKFFsteDDLREVEKVSNMNDALLDEMKTACEKVEKSERLV 241 Mexican tetra
XP_017569556 162 YSSVPVSISNLGMLDQHDYWRVSATCpSLSHCQAVKKHRTKFFcsdDDLREVEKVSDMNDALLDEMKTVSEKVEKSERLV 241 red-bellied pir...
XP_028660867 161 FQKIPVMVTNLGMADQHDYHTFSTTYtSQGYSCAIKKHRSKFFnpdGTLKEVCEINKMSSSLQEELKKTCKKVEESERSV 240 reedfish
XP_030624582 162 YHKIPILVNNLGMLEQQDYWRVSTACsSLSHSQAVRKCRSKFLssdDNLSKVEHISNMNDILLTELKNACKDVEESERSV 241 milkfish
XP_028829150 164 LYSVPVHVSNLGILEQHDYWRISATCaALSQSQAIKKHRSKFFacdGTLDEVETVSSMNDTLLEELKAASEKVEKTEKLV 243 denticle herring
XP_018609099 164 YHNIPVVVSNLGMLEQQDYWRGSISCsSYSYNQAVRNHRSKFFtpdGSLKEVGEVNAMNDTLQAELKAACEAVEKSERLL 243 Asian bonytongue
Feature 1                                                                                        
6GVW_F       245 EKLLMDVNQLKEVRRTQQARatga--gekNVQRNPQENILLCQALRTFFpeSEVLHSCVISLKNRHISPSGCNVNHHVDv 322 Mus musculus
B5X1P9       242 EKLLADVSDLRRMVNERKQElreisadgaSTPAQPRENVLLCEVIKTLFpgASLLQTQALNFQGFPLPEFCCSTDHGIDi 321 Salmo salar
KAB5548998   242 EKLQAEITELREAVRERRRKlqdsdtkesSPPEKPEENVLLCAALKALFpnTPSLRSQTLSVEGFPVLHMCCTEDHGVDv 321 striped catfish
XP_026855089 242 EKLQAEITELREAISKRKEKdqetdtkesPTPKEPKENVLLCAALKALFpnMPSFQTQTLTVQGFSVLEMCCSTDHGIDi 321 electric eel
XP_022522232 242 EKLQADITELKEAISKQKKKqqqcnttetSTPNEPKENVLLCAALKALFpnSPSLRTQTLTVQGFPVLEVCCSSEHGIDi 321 Mexican tetra
XP_017569556 242 EKLQADITELKEAIRKRKKKhqdcddiekSTSNEPKENLLLCAALRALFpnAPSLRTQTLTVQGFPVLELCCSTDHGIDi 321 red-bellied pir...
XP_028660867 241 EKLLSEVKHLRKIVKEKKKLamqeagakdYENSKAEENILLCQALQKLFpeSKLLQTRTTTVDGFALPAYCCGTDHDIDi 320 reedfish
XP_030624582 242 EKLRAEVTALREAISKRSTQqkrretkeePKPDECQENVLLCTSLKALFpnAPLLRTQALTLEGFPVLELCCDTDHDIDi 321 milkfish
XP_028829150 244 EKLQTEVSALRKQISKKNQKrvf----elSAPEEPEENVLLCESLRTLFpsRPLLRTQTLTRQGSPVPELCCSVPHNINv 319 denticle herring
XP_018609099 244 ELLLAEVSTLRKSIAEKSNCnkte-kdlhAISDTPQENVLLCAALRALFpeSPLLRTQALTLQGAPLPEYSCSTDHDIDi 322 Asian bonytongue
Feature 1                                                                         
6GVW_F       323 VDQLTLMVEYVYSPEAsp---vpTAQLRKRKALDth-dQGSVKRPRLLETESRPSVAASRSRHQD 383 Mus musculus
B5X1P9       322 ATTLPLILSHTLPKARkgr-lgrGGGTSWRKCPLressEVPKRRKGMLEETDETLSVSGSETEED 385 Salmo salar
KAB5548998   322 PTKLPLLLLQCDHTARkrr--msSGSRLKGKFQStg-vSQKGKKRKVDTELSEPLSESGSDTEVE 383 striped catfish
XP_026855089 322 PTRLPLVLEYEHGMRKrk---msRGCRVKGKYHPts-iSHRNKRKPMTVDTNESLSESGTEEEVE 382 electric eel
XP_022522232 322 PSRLPLVLEYEQGLRKrk---tsRDCRSQEKSQVag-tSLRRKRKRNTTDTQDPAEEEEVDNLQD 382 Mexican tetra
XP_017569556 322 PTRLPLVLEPERGMRKrk---asRGGLLKQKSHV----TGMSNKRKNTIDPNESDSGSDTEIEMT 379 red-bellied piranha
XP_028660867 321 LERLTLVAPEGPYATR-------TPLSHKRKAVSpv-hSPPPPKSQFKTVCEESNSEEDDDEHSN 377 reedfish
XP_030624582 322 SAKLPLILDCQHTKARkrk--ldTWERSSEQCLLpg-lSPSSKRKKNLGDTTGLLFESGSDTEVE 383 milkfish
XP_028829150 320 PETLPFIFSYHQAQERkrksasyTKPFGKRPPSEl---LESRRKKRSTTGGERSFSDSEADTEEE 381 denticle herring
XP_018609099 323 STALPLILAHQDATDRtwgpgrkGWNRGKRRLPEashsIQRKRRDVMEIDSEEAFTVSGSETDEE 387 Asian bonytongue

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap